Wall clock time and date at job start Mon Mar 30 2020 01:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99679 * 2 1 4 4 H 1.48494 * 109.47280 * 269.99916 * 3 2 1 5 5 H 1.48499 * 109.47281 * 30.00195 * 3 2 1 6 6 H 1.48507 * 109.46966 * 149.99779 * 3 2 1 7 7 C 1.37872 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00144 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00231 * 179.97438 * 7 2 1 10 10 H 1.09007 * 109.38272 * 59.87125 * 9 7 2 11 11 C 1.53340 * 109.43117 * 179.73920 * 9 7 2 12 12 S 1.81956 * 108.35728 * 180.43329 * 11 9 7 13 13 C 1.81963 * 101.79991 * 309.23248 * 12 11 9 14 14 C 1.53342 * 108.35196 * 50.76782 * 13 12 11 15 15 O 1.42521 * 109.42842 * 300.00013 * 9 7 2 16 16 H 0.97006 * 120.00307 * 0.02562 * 1 2 3 17 17 H 1.08995 * 109.68809 * 60.71241 * 11 9 7 18 18 H 1.09010 * 109.71630 * 300.16889 * 11 9 7 19 19 H 1.08999 * 109.68379 * 291.05054 * 13 12 11 20 20 H 1.08999 * 109.71627 * 170.50163 * 13 12 11 21 21 H 1.09003 * 109.42678 * 179.56985 * 14 13 12 22 22 H 1.08998 * 109.43167 * 59.72643 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 1 3.8736 -0.6779 0.8882 11 6 4.0217 -2.6399 0.0049 12 16 5.8409 -2.6057 0.0172 13 6 6.2011 -1.4749 -1.3622 14 6 5.3733 -0.1986 -1.1689 15 8 3.9851 -0.5216 -1.1651 16 1 -0.4851 0.8401 -0.0004 17 1 3.6701 -3.1571 -0.8877 18 1 3.6581 -3.1545 0.8945 19 1 5.9305 -1.9488 -2.3057 20 1 7.2625 -1.2270 -1.3669 21 1 5.5818 0.4955 -1.9831 22 1 5.6400 0.2664 -0.2199 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260263072.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:08 Heat of formation + Delta-G solvation = -49.105372 kcal Electronic energy + Delta-G solvation = -8757.378619 eV Core-core repulsion = 7017.720155 eV Total energy + Delta-G solvation = -1739.658464 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 174.046 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.72937 -32.98150 -31.04342 -29.78467 -25.63811 -22.79101 -20.67122 -17.47907 -15.91527 -15.43138 -15.14283 -14.24569 -13.71887 -13.37361 -13.02868 -12.54457 -11.58595 -11.30001 -11.00859 -10.78715 -10.45026 -9.98065 -9.69153 -9.16474 -8.74841 -8.71425 -7.26417 -6.23377 -4.34152 2.22154 2.97779 3.34738 3.38128 3.45042 4.37418 4.52300 5.18612 5.28675 5.55795 5.59866 5.87806 5.90350 6.08607 6.13546 6.29680 6.82168 7.41076 8.23841 8.33565 8.75887 9.37415 10.86036 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.069498 B = 0.018612 C = 0.015739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.793712 B = 1504.059301 C = 1778.585499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.270 1.270 7 C -0.516 4.516 8 H 0.084 0.916 9 C 0.181 3.819 10 H 0.033 0.967 11 C -0.076 4.076 12 S -0.317 6.317 13 C -0.104 4.104 14 C 0.048 3.952 15 O -0.382 6.382 16 H 0.269 0.731 17 H 0.084 0.916 18 H 0.105 0.895 19 H 0.086 0.914 20 H 0.100 0.900 21 H 0.087 0.913 22 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.813 -0.312 -1.281 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.120 4.120 3 Si 0.737 3.263 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.554 4.554 8 H 0.102 0.898 9 C 0.124 3.876 10 H 0.050 0.950 11 C -0.224 4.224 12 S -0.090 6.090 13 C -0.253 4.253 14 C -0.031 4.031 15 O -0.302 6.302 16 H 0.078 0.922 17 H 0.103 0.897 18 H 0.124 0.876 19 H 0.105 0.895 20 H 0.119 0.881 21 H 0.105 0.895 22 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.276 -0.745 -0.746 10.330 hybrid contribution -0.179 1.267 -0.691 1.454 sum 10.096 0.521 -1.437 10.211 Atomic orbital electron populations 1.69911 1.06558 1.27774 1.47844 1.25034 0.94754 0.99938 0.92260 0.86342 0.79398 0.81901 0.78639 1.19944 1.22654 1.19545 1.20842 0.86673 0.95275 1.52623 0.89759 1.20552 0.95622 0.86282 0.85118 0.94985 1.24182 0.88495 1.03882 1.05866 1.86559 1.13021 1.63347 1.46080 1.24015 1.03442 0.98928 0.98914 1.22611 0.84912 0.93977 1.01607 1.88049 1.20066 1.77113 1.45010 0.92164 0.89735 0.87629 0.89538 0.88146 0.89509 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.58 13.96 55.43 0.77 -25.81 14 2 C 0.09 2.48 5.47 -17.82 -0.10 2.38 14 3 Si 0.91 22.65 26.18 -169.99 -4.45 18.20 14 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 14 5 H -0.30 -7.32 7.11 56.52 0.40 -6.92 14 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 14 7 C -0.52 -14.48 9.37 -34.44 -0.32 -14.81 14 8 H 0.08 2.49 7.99 -52.49 -0.42 2.07 14 9 C 0.18 4.36 1.83 -27.71 -0.05 4.31 14 10 H 0.03 0.80 7.02 -51.92 -0.36 0.44 14 11 C -0.08 -1.58 5.96 37.33 0.22 -1.36 14 12 S -0.32 -5.85 22.41 -107.50 -2.41 -8.26 14 13 C -0.10 -1.70 6.74 37.33 0.25 -1.44 14 14 C 0.05 0.89 6.68 37.33 0.25 1.14 14 15 O -0.38 -8.97 7.81 -35.23 -0.28 -9.24 14 16 H 0.27 7.53 8.31 -40.82 -0.34 7.19 14 17 H 0.08 1.76 8.14 -51.93 -0.42 1.33 14 18 H 0.11 2.09 8.14 -51.92 -0.42 1.67 14 19 H 0.09 1.37 8.14 -51.93 -0.42 0.94 14 20 H 0.10 1.34 8.14 -51.93 -0.42 0.91 14 21 H 0.09 1.38 8.14 -51.93 -0.42 0.96 14 22 H 0.05 0.96 7.97 -51.93 -0.41 0.55 14 LS Contribution 199.15 15.07 3.00 3.00 Total: -1.00 -29.71 199.15 -5.59 -35.30 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -2.48 Total: -3.40 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 0.25 Total: -9.78 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.77 Total: -25.81 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.28 Total: -9.24 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.45 Total: 18.20 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -2.41 Total: -8.26 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -29.71 -5.59 -35.30 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260263072.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.809 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds