Wall clock time and date at job start Mon Mar 30 2020 01:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.42997 * 299.89363 * 9 7 2 11 11 C 1.53344 * 109.42582 * 180.02562 * 9 7 2 12 12 S 1.81964 * 108.35820 * 179.57130 * 11 9 7 13 13 C 1.81963 * 101.79785 * 50.75818 * 12 11 9 14 14 C 1.53335 * 108.36048 * 309.23908 * 13 12 11 15 15 O 1.42516 * 109.43097 * 59.73868 * 9 7 2 16 16 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 17 17 H 1.09002 * 109.68855 * 299.28542 * 11 9 7 18 18 H 1.09002 * 109.69173 * 59.81634 * 11 9 7 19 19 H 1.09001 * 109.68303 * 68.95794 * 13 12 11 20 20 H 1.08998 * 109.68855 * 189.51864 * 13 12 11 21 21 H 1.08998 * 109.43192 * 180.42788 * 14 13 12 22 22 H 1.08998 * 109.42727 * 300.27460 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.6256 -2.5614 0.8781 11 6 2.2482 -3.6640 -0.0172 12 16 1.3091 -5.2225 -0.0124 13 6 0.1452 -4.9598 -1.3863 14 6 -0.5456 -3.6062 -1.1819 15 8 0.4277 -2.5652 -1.1740 16 1 -0.4850 0.8401 0.0040 17 1 2.8691 -3.6122 -0.9116 18 1 2.8783 -3.6116 0.8707 19 1 0.6878 -4.9562 -2.3316 20 1 -0.6002 -5.7551 -1.3933 21 1 -1.2535 -3.4343 -1.9927 22 1 -1.0785 -3.6110 -0.2312 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260263097.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:09 Heat of formation + Delta-G solvation = -72.115448 kcal Electronic energy + Delta-G solvation = -8687.145609 eV Core-core repulsion = 6946.489353 eV Total energy + Delta-G solvation = -1740.656255 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 174.046 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.09092 -34.92963 -32.48010 -31.19209 -27.34088 -24.23071 -22.64879 -19.10325 -17.35693 -16.87106 -16.76499 -16.02831 -15.14736 -14.85408 -14.69291 -14.09203 -13.00852 -12.90271 -12.71621 -12.42741 -12.17083 -12.00231 -11.37889 -10.99680 -10.53990 -10.16255 -8.69276 -8.19463 -6.42958 0.83881 1.42270 1.45935 1.51593 1.56070 2.40034 2.93945 3.56361 3.89198 4.22650 4.25379 4.36538 4.44241 4.69935 4.79224 4.88775 5.23067 5.67025 6.01227 6.59006 7.02690 7.33065 8.87300 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.086966 B = 0.014792 C = 0.013258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.889116 B = 1892.426954 C = 2111.487905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.282 1.282 5 H -0.263 1.263 6 H -0.269 1.269 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.220 3.780 10 H -0.005 1.005 11 C -0.083 4.083 12 S -0.316 6.316 13 C -0.096 4.096 14 C 0.052 3.948 15 O -0.392 6.392 16 H 0.265 0.735 17 H 0.079 0.921 18 H 0.106 0.894 19 H 0.092 0.908 20 H 0.134 0.866 21 H 0.104 0.896 22 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 -5.505 -1.799 5.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.793 3.207 4 H -0.207 1.207 5 H -0.188 1.188 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.090 0.910 9 C 0.163 3.837 10 H 0.013 0.987 11 C -0.231 4.231 12 S -0.089 6.089 13 C -0.244 4.244 14 C -0.027 4.027 15 O -0.312 6.312 16 H 0.074 0.926 17 H 0.098 0.902 18 H 0.124 0.876 19 H 0.110 0.890 20 H 0.152 0.848 21 H 0.122 0.878 22 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.723 -6.222 -1.271 6.391 hybrid contribution 0.070 1.560 -0.500 1.640 sum 0.793 -4.661 -1.771 5.049 Atomic orbital electron populations 1.70144 1.07778 1.27906 1.47464 1.25970 0.95710 1.03195 0.92779 0.85460 0.78314 0.77696 0.79229 1.20680 1.18782 1.19400 1.21368 0.93412 0.90626 1.53985 0.91004 1.19718 0.87271 0.92226 0.84511 0.98732 1.24139 1.00375 0.93125 1.05457 1.86386 1.46066 1.27971 1.48462 1.24135 1.00184 1.02218 0.97824 1.22668 0.91815 0.86592 1.01629 1.87974 1.48612 1.51115 1.43456 0.92622 0.90219 0.87587 0.88964 0.84780 0.87836 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.82 12.83 21.45 0.28 -52.54 14 2 C 0.03 1.50 5.40 84.66 0.46 1.95 14 3 Si 0.97 42.96 29.54 68.60 2.03 44.99 14 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 14 5 H -0.26 -11.10 7.11 99.48 0.71 -10.40 14 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 14 7 C -0.56 -31.02 8.79 25.60 0.23 -30.79 14 8 H 0.07 3.81 7.74 -2.91 -0.02 3.78 14 9 C 0.22 11.52 2.35 29.96 0.07 11.59 14 10 H 0.00 -0.28 7.97 -2.39 -0.02 -0.30 14 11 C -0.08 -3.58 5.96 72.10 0.43 -3.15 14 12 S -0.32 -11.95 22.42 -56.49 -1.27 -13.21 14 13 C -0.10 -3.17 6.74 72.09 0.49 -2.68 14 14 C 0.05 2.09 6.68 72.09 0.48 2.57 14 15 O -0.39 -20.39 9.49 -148.98 -1.41 -21.81 14 16 H 0.26 14.68 8.31 -92.70 -0.77 13.91 14 17 H 0.08 3.38 8.14 -2.39 -0.02 3.36 14 18 H 0.11 4.34 8.14 -2.39 -0.02 4.32 14 19 H 0.09 2.92 8.14 -2.39 -0.02 2.91 14 20 H 0.13 3.48 8.14 -2.39 -0.02 3.46 14 21 H 0.10 3.64 8.14 -2.39 -0.02 3.62 14 22 H 0.04 1.59 7.97 -2.39 -0.02 1.57 14 Total: -1.00 -62.20 204.20 2.96 -59.24 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.19 Total: 3.84 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 2.15 Total: -20.51 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.28 Total: -52.54 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.41 Total: -21.81 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -11.95 SS G_CDS: -1.27 Total: -13.21 kcal Total: -62.20 2.96 -59.24 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260263097.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.878 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds