Wall clock time and date at job start Mon Mar 30 2020 01:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00330 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00676 * 3 2 1 5 5 H 1.48502 * 109.47178 * 30.00066 * 3 2 1 6 6 H 1.48498 * 109.47403 * 150.00294 * 3 2 1 7 7 C 1.37880 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 11 11 F 1.39905 * 109.47072 * 299.99830 * 9 7 2 12 12 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 13 13 H 1.09004 * 110.75088 * 307.02092 * 12 9 7 14 14 C 1.55308 * 110.84602 * 70.71345 * 12 9 7 15 15 C 1.54953 * 100.93985 * 152.32492 * 14 12 9 16 16 O 1.43640 * 105.13724 * 323.55340 * 15 14 12 17 17 C 1.43237 * 109.97112 * 24.43007 * 16 15 14 18 18 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 19 19 H 1.09001 * 111.12444 * 270.23794 * 14 12 9 20 20 H 1.08992 * 111.12943 * 34.40435 * 14 12 9 21 21 H 1.09000 * 110.30497 * 204.63672 * 15 14 12 22 22 H 1.09002 * 110.39402 * 82.51642 * 15 14 12 23 23 H 1.09000 * 109.83374 * 238.77720 * 17 16 15 24 24 H 1.09000 * 109.90771 * 117.84245 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8752 -0.6805 0.8888 11 9 3.9774 -0.5344 -1.1435 12 6 4.0215 -2.6366 -0.0010 13 1 3.5719 -3.2051 0.8132 14 6 3.7532 -3.3178 -1.3707 15 6 4.9003 -4.3587 -1.4111 16 8 6.0212 -3.7057 -0.7944 17 6 5.5623 -2.6747 0.0876 18 1 -0.4850 0.8400 0.0004 19 1 2.7789 -3.8063 -1.3823 20 1 3.8421 -2.6033 -2.1889 21 1 5.1360 -4.6219 -2.4423 22 1 4.6245 -5.2500 -0.8475 23 1 5.9741 -1.7137 -0.2208 24 1 5.8685 -2.8972 1.1098 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260653953.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:02 Heat of formation + Delta-G solvation = -106.105013 kcal Electronic energy + Delta-G solvation = -10582.511080 eV Core-core repulsion = 8410.000845 eV Total energy + Delta-G solvation = -2172.510235 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 174.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.33884 -38.70137 -33.28061 -31.94232 -29.27544 -27.20850 -22.70571 -21.94804 -19.54488 -17.15653 -16.20983 -15.62597 -14.88031 -14.45874 -14.31689 -13.44819 -13.01568 -12.64367 -12.34998 -11.84021 -11.09938 -11.01252 -10.90083 -10.55017 -10.25957 -9.88561 -9.41594 -9.13363 -9.02500 -8.76984 -6.25247 -4.37667 3.29963 3.35745 3.41015 4.29904 4.33054 5.01572 5.12413 5.37257 5.42018 5.61662 5.77023 5.97107 6.06070 6.14840 6.31199 6.42367 6.59892 6.78758 7.17314 7.33378 7.43083 8.25190 8.73233 9.34131 10.85669 Molecular weight = 174.08amu Principal moments of inertia in cm(-1) A = 0.077174 B = 0.015344 C = 0.013882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.730891 B = 1824.365658 C = 2016.534914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.083 3.917 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.187 3.813 10 H 0.043 0.957 11 F -0.239 7.239 12 C -0.131 4.131 13 H 0.091 0.909 14 C -0.138 4.138 15 C 0.049 3.951 16 O -0.392 6.392 17 C 0.050 3.950 18 H 0.268 0.732 19 H 0.082 0.918 20 H 0.084 0.916 21 H 0.078 0.922 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -4.146 -0.369 8.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.122 4.122 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.150 3.850 10 H 0.061 0.939 11 F -0.220 7.220 12 C -0.150 4.150 13 H 0.110 0.890 14 C -0.176 4.176 15 C -0.027 4.027 16 O -0.312 6.312 17 C -0.027 4.027 18 H 0.078 0.922 19 H 0.101 0.899 20 H 0.103 0.897 21 H 0.096 0.904 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.530 -4.070 -0.431 8.571 hybrid contribution 0.042 0.965 0.021 0.966 sum 7.572 -3.105 -0.410 8.194 Atomic orbital electron populations 1.69903 1.06372 1.27588 1.48332 1.25001 0.94871 0.99591 0.92720 0.86623 0.79614 0.82705 0.78959 1.19843 1.22083 1.19310 1.21246 0.88178 0.95504 1.54388 0.89789 1.19516 0.95741 0.87252 0.82445 0.93928 1.92611 1.90737 1.82696 1.55980 1.23177 0.93780 0.99281 0.98730 0.89033 1.23127 0.98532 0.97722 0.98206 1.23399 0.86534 0.95404 0.97393 1.88300 1.31280 1.50496 1.61109 1.23263 0.94785 0.91336 0.93279 0.92221 0.89898 0.89724 0.90422 0.92795 0.91276 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.78 14 2 C 0.08 2.38 5.47 -17.82 -0.10 2.29 14 3 Si 0.89 22.30 26.39 -169.99 -4.49 17.81 14 4 H -0.27 -6.87 7.11 56.52 0.40 -6.47 14 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 14 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 14 7 C -0.56 -15.34 9.13 -34.44 -0.31 -15.65 14 8 H 0.08 2.44 7.99 -52.49 -0.42 2.02 14 9 C 0.19 4.42 2.24 -27.88 -0.06 4.36 14 10 H 0.04 1.00 7.20 -51.93 -0.37 0.62 14 11 F -0.24 -5.91 13.53 2.25 0.03 -5.88 14 12 C -0.13 -2.58 2.81 -88.67 -0.25 -2.83 14 13 H 0.09 1.73 8.14 -51.93 -0.42 1.31 14 14 C -0.14 -2.55 6.25 -24.48 -0.15 -2.71 14 15 C 0.05 0.78 7.78 38.19 0.30 1.08 14 16 O -0.39 -7.11 11.36 -35.23 -0.40 -7.51 14 17 C 0.05 0.89 7.34 37.88 0.28 1.17 14 18 H 0.27 7.50 8.31 -40.82 -0.34 7.16 14 19 H 0.08 1.49 8.14 -51.93 -0.42 1.07 14 20 H 0.08 1.69 7.18 -51.93 -0.37 1.31 14 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 14 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 14 23 H 0.07 1.27 7.50 -51.93 -0.39 0.88 14 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 14 LS Contribution 205.89 15.07 3.10 3.10 Total: -1.00 -29.81 205.89 -4.12 -33.92 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -2.84 Total: -3.38 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.30 Total: -12.30 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.77 Total: -25.78 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.40 Total: -7.51 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.03 Total: -5.88 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.49 Total: 17.81 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -29.81 -4.12 -33.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260653953.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.181 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds