Wall clock time and date at job start Mon Mar 30 2020 02:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 F 1.39895 * 109.46931 * 299.99888 * 10 9 7 12 12 F 1.39897 * 109.47129 * 60.00167 * 10 9 7 13 13 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 14 14 C 1.53004 * 117.49912 * 243.74399 * 13 10 9 15 15 C 1.53005 * 117.49441 * 175.08604 * 13 10 9 16 16 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 17 17 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 18 18 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 19 19 H 1.08998 * 115.55258 * 29.41891 * 13 10 9 20 20 H 1.08995 * 117.49607 * 0.02562 * 14 13 10 21 21 H 1.08997 * 117.49720 * 145.02846 * 14 13 10 22 22 H 1.09001 * 117.49764 * 214.98321 * 15 13 10 23 23 H 1.08998 * 117.49796 * 0.02562 * 15 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 9 3.5556 -3.2957 1.1427 12 9 3.5548 -3.2963 -1.1419 13 6 5.5515 -2.6365 -0.0012 14 6 6.2570 -3.2373 -1.2187 15 6 6.2580 -3.9887 0.1150 16 1 -0.4850 0.8401 0.0004 17 1 3.8753 -0.6796 0.8894 18 1 3.8746 -0.6807 -0.8905 19 1 6.0220 -1.7797 0.4812 20 1 5.6311 -3.6322 -2.0189 21 1 7.1919 -2.7760 -1.5370 22 1 7.1935 -4.0213 0.6735 23 1 5.6328 -4.8782 0.1919 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260783705.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:33 Heat of formation + Delta-G solvation = -86.688654 kcal Electronic energy + Delta-G solvation = -10592.451540 eV Core-core repulsion = 8270.011478 eV Total energy + Delta-G solvation = -2322.440062 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 176.071 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.95285 -45.92825 -36.77052 -33.17856 -30.51765 -25.65304 -22.29257 -21.61608 -20.10798 -17.11736 -16.50006 -16.06487 -15.42838 -14.39805 -13.97242 -13.06817 -12.89168 -12.53254 -12.32420 -11.86579 -11.45010 -11.35650 -11.18199 -10.66905 -10.57510 -10.27979 -9.99631 -9.43750 -9.34851 -8.62335 -6.09992 -4.10554 3.25778 3.33016 3.33873 3.81205 4.37566 4.42838 4.89098 4.99938 5.08951 5.20891 5.50678 5.72414 5.83679 5.92922 5.97002 6.22810 6.28824 6.81036 7.05656 7.56657 8.40039 8.94585 9.47654 11.03147 Molecular weight = 176.07amu Principal moments of inertia in cm(-1) A = 0.066050 B = 0.014478 C = 0.013244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.818372 B = 1933.565158 C = 2113.639570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.079 0.921 9 C -0.045 4.045 10 C 0.329 3.671 11 F -0.202 7.202 12 F -0.203 7.203 13 C -0.207 4.207 14 C -0.164 4.164 15 C -0.169 4.169 16 H 0.265 0.735 17 H 0.044 0.956 18 H 0.041 0.959 19 H 0.126 0.874 20 H 0.106 0.894 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.860 -3.252 -0.592 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.097 0.903 9 C -0.083 4.083 10 C 0.293 3.707 11 F -0.183 7.183 12 F -0.184 7.184 13 C -0.226 4.226 14 C -0.201 4.201 15 C -0.206 4.206 16 H 0.075 0.925 17 H 0.062 0.938 18 H 0.059 0.941 19 H 0.144 0.856 20 H 0.124 0.876 21 H 0.117 0.883 22 H 0.116 0.884 23 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.663 -3.168 -0.590 12.100 hybrid contribution 0.251 0.845 0.037 0.882 sum 11.914 -2.323 -0.552 12.151 Atomic orbital electron populations 1.69898 1.06240 1.27049 1.50137 1.24938 0.94789 0.98961 0.94275 0.86804 0.80338 0.83650 0.78684 1.19999 1.21010 1.19002 1.20874 0.88048 0.95379 1.51915 0.90299 1.20532 0.99613 0.88909 0.99265 1.20424 0.88350 0.90906 0.71011 1.92932 1.90312 1.83321 1.51688 1.92902 1.90291 1.83384 1.51812 1.23447 0.93759 0.99465 1.05930 1.23005 1.01975 1.03158 0.91927 1.22934 1.02164 0.95083 1.00463 0.92480 0.93800 0.94103 0.85634 0.87609 0.88338 0.88374 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.07 14 2 C 0.07 2.13 5.47 -17.82 -0.10 2.04 14 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 14 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 14 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 14 6 H -0.27 -6.08 6.54 56.52 0.37 -5.72 14 7 C -0.52 -15.43 9.14 -34.44 -0.31 -15.74 14 8 H 0.08 2.57 7.99 -52.48 -0.42 2.15 14 9 C -0.05 -1.11 3.60 -27.88 -0.10 -1.21 14 10 C 0.33 7.18 1.81 -26.73 -0.05 7.13 14 11 F -0.20 -4.70 16.66 2.25 0.04 -4.66 14 12 F -0.20 -4.65 15.33 2.25 0.03 -4.61 14 13 C -0.21 -3.46 5.51 -90.62 -0.50 -3.96 14 14 C -0.16 -2.29 9.92 -26.69 -0.26 -2.55 14 15 C -0.17 -2.35 10.14 -26.69 -0.27 -2.62 14 16 H 0.27 7.65 8.31 -40.82 -0.34 7.31 14 17 H 0.04 1.03 7.20 -51.93 -0.37 0.66 14 18 H 0.04 0.95 7.57 -51.93 -0.39 0.56 14 19 H 0.13 1.89 8.08 -51.93 -0.42 1.47 14 20 H 0.11 1.56 7.18 -51.93 -0.37 1.19 14 21 H 0.10 1.12 8.14 -51.93 -0.42 0.70 14 22 H 0.10 1.11 8.14 -51.93 -0.42 0.69 14 23 H 0.10 1.41 8.14 -51.93 -0.42 0.99 14 LS Contribution 210.50 15.07 3.17 3.17 Total: -1.00 -31.30 210.50 -4.66 -35.96 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -2.41 Total: -2.56 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.60 Total: -16.91 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.77 Total: -27.07 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -31.30 -4.66 -35.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260783705.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.733 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds