Wall clock time and date at job start Mon Mar 30 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 F 1.39904 * 109.46969 * 300.00258 * 9 7 2 12 12 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 13 13 C 1.53044 * 113.14874 * 165.37426 * 12 9 7 14 14 S 1.81430 * 89.88882 * 211.84808 * 13 12 9 15 15 C 1.53041 * 113.15493 * 64.99922 * 12 9 7 16 16 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 17 17 H 1.09000 * 112.49412 * 295.21010 * 12 9 7 18 18 H 1.08999 * 113.15174 * 327.11026 * 13 12 9 19 19 H 1.09005 * 113.14679 * 96.59657 * 13 12 9 20 20 H 1.08988 * 113.14875 * 263.40478 * 15 12 9 21 21 H 1.09004 * 113.14378 * 32.89071 * 15 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 9 0.4472 -2.5735 1.1421 12 6 2.2454 -3.6620 -0.0005 13 6 1.6015 -5.0042 0.3548 14 16 3.1532 -5.5401 1.1273 15 6 3.0885 -3.7330 1.2747 16 1 -0.4850 0.8400 0.0004 17 1 2.8424 -3.7002 -0.9117 18 1 0.7794 -4.9106 1.0644 19 1 1.3322 -5.5954 -0.5206 20 1 4.0645 -3.2593 1.1700 21 1 2.5530 -3.3943 2.1617 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260878969.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:13 Heat of formation + Delta-G solvation = -43.238423 kcal Electronic energy + Delta-G solvation = -8769.938295 eV Core-core repulsion = 6879.762458 eV Total energy + Delta-G solvation = -1890.175837 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 176.037 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.74460 -35.92650 -32.69976 -27.74198 -25.71884 -23.41441 -19.39743 -16.77443 -16.17233 -15.30621 -14.62749 -14.02883 -13.52297 -13.07894 -12.41228 -11.98348 -11.57555 -11.21889 -11.01996 -10.68013 -10.54740 -10.31902 -10.27594 -9.02862 -8.80574 -8.61484 -7.36934 -6.20067 -4.36546 2.28077 2.47311 3.21805 3.29942 3.33545 4.28434 5.03119 5.13786 5.38646 5.63507 5.90119 5.94849 6.09597 6.22022 6.58144 6.90987 7.58948 7.74912 7.92408 8.68983 9.38501 10.87202 Molecular weight = 176.04amu Principal moments of inertia in cm(-1) A = 0.084361 B = 0.013628 C = 0.012379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.826769 B = 2054.044110 C = 2261.403918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.076 3.924 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.563 4.563 8 H 0.068 0.932 9 C 0.228 3.772 10 H 0.044 0.956 11 F -0.232 7.232 12 C -0.109 4.109 13 C -0.067 4.067 14 S -0.360 6.360 15 C -0.043 4.043 16 H 0.265 0.735 17 H 0.109 0.891 18 H 0.107 0.893 19 H 0.087 0.913 20 H 0.090 0.910 21 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 -4.471 -0.158 5.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.601 4.601 8 H 0.086 0.914 9 C 0.190 3.810 10 H 0.062 0.938 11 F -0.213 7.213 12 C -0.130 4.130 13 C -0.216 4.216 14 S -0.134 6.134 15 C -0.191 4.191 16 H 0.075 0.925 17 H 0.127 0.873 18 H 0.125 0.875 19 H 0.106 0.894 20 H 0.108 0.892 21 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.685 -5.562 0.199 6.674 hybrid contribution -0.228 1.738 -0.114 1.757 sum 3.457 -3.824 0.084 5.155 Atomic orbital electron populations 1.70005 1.06174 1.27243 1.47414 1.25068 0.94844 0.99746 0.93371 0.86420 0.80155 0.82959 0.77790 1.19437 1.20724 1.20717 1.21399 0.93688 0.90018 1.54950 0.91383 1.18900 0.86812 0.91972 0.83332 0.93808 1.92690 1.76297 1.97194 1.55161 1.23176 0.97621 0.94310 0.97849 1.24420 0.96389 0.98206 1.02540 1.88571 1.28919 1.15793 1.80090 1.24240 1.03881 0.88408 1.02576 0.92493 0.87315 0.87500 0.89395 0.89167 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.97 12.95 55.43 0.72 -24.25 14 2 C 0.08 2.04 5.42 -17.82 -0.10 1.95 14 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 14 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 14 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 14 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 14 7 C -0.56 -14.77 8.48 -34.44 -0.29 -15.07 14 8 H 0.07 1.72 7.69 -52.49 -0.40 1.32 14 9 C 0.23 5.50 3.20 -27.88 -0.09 5.41 14 10 H 0.04 1.11 8.14 -51.93 -0.42 0.69 14 11 F -0.23 -6.06 15.03 2.25 0.03 -6.03 14 12 C -0.11 -2.13 3.34 -90.58 -0.30 -2.43 14 13 C -0.07 -1.18 7.40 37.18 0.28 -0.91 14 14 S -0.36 -6.49 24.80 -107.50 -2.67 -9.15 14 15 C -0.04 -0.81 6.97 37.18 0.26 -0.55 14 16 H 0.27 7.13 8.31 -40.82 -0.34 6.79 14 17 H 0.11 2.00 8.14 -51.93 -0.42 1.58 14 18 H 0.11 1.93 7.33 -51.93 -0.38 1.54 14 19 H 0.09 1.36 8.14 -51.93 -0.42 0.94 14 20 H 0.09 1.61 8.14 -51.94 -0.42 1.19 14 21 H 0.11 2.12 7.65 -51.93 -0.40 1.72 14 LS Contribution 201.99 15.07 3.04 3.04 Total: -1.00 -28.13 201.99 -6.14 -34.28 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -2.01 Total: -1.84 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.25 Total: -11.60 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.72 Total: -24.25 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.03 Total: -6.03 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -2.67 Total: -9.15 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -28.13 -6.14 -34.28 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260878969.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.961 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds