Wall clock time and date at job start Mon Mar 30 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 11 11 F 1.39894 * 109.47157 * 59.99319 * 9 7 2 12 12 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 13 13 C 1.53040 * 113.14800 * 280.36964 * 12 9 7 14 14 S 1.81426 * 89.88892 * 211.85719 * 13 12 9 15 15 C 1.53045 * 113.14795 * 179.97438 * 12 9 7 16 16 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 17 17 H 1.08999 * 112.49743 * 50.20913 * 12 9 7 18 18 H 1.08999 * 113.14921 * 327.10904 * 13 12 9 19 19 H 1.08996 * 113.15374 * 96.59615 * 13 12 9 20 20 H 1.09002 * 113.14375 * 263.40329 * 15 12 9 21 21 H 1.09000 * 113.15204 * 32.88129 * 15 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6281 -2.5591 0.8866 11 9 0.4420 -2.5705 -1.1449 12 6 2.2453 -3.6621 -0.0121 13 6 2.8237 -3.9516 -1.3992 14 16 2.9459 -5.7118 -0.9768 15 6 1.5667 -5.0339 -0.0120 16 1 -0.4850 -0.8400 0.0004 17 1 3.0091 -3.5620 0.7591 18 1 2.1195 -3.7529 -2.2071 19 1 3.7933 -3.4826 -1.5656 20 1 1.4840 -5.4709 0.9831 21 1 0.6201 -5.0438 -0.5523 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260878971.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:14 Heat of formation + Delta-G solvation = -64.354348 kcal Electronic energy + Delta-G solvation = -8790.143987 eV Core-core repulsion = 6899.052495 eV Total energy + Delta-G solvation = -1891.091492 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 176.037 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.13799 -37.63860 -34.95989 -29.35968 -27.31873 -25.16972 -21.40561 -19.42315 -17.74737 -16.95889 -16.29010 -16.05013 -15.63141 -14.92485 -14.16589 -13.68281 -13.49875 -13.17832 -12.65828 -12.62535 -12.21264 -11.92709 -11.81264 -11.00391 -10.63593 -10.46396 -8.89828 -8.71300 -6.56909 0.71558 0.89825 1.56651 1.63742 1.83027 2.54646 3.10857 3.37683 3.76662 3.93616 4.15531 4.34238 4.43625 4.54693 4.68225 4.96156 5.41639 5.70768 6.07134 6.42942 7.32766 8.66521 Molecular weight = 176.04amu Principal moments of inertia in cm(-1) A = 0.087823 B = 0.013289 C = 0.012282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.744981 B = 2106.488635 C = 2279.208074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.020 4.020 3 Si 1.119 2.881 4 H -0.286 1.286 5 H -0.263 1.263 6 H -0.270 1.270 7 C -0.649 4.649 8 H 0.068 0.932 9 C 0.203 3.797 10 H 0.026 0.974 11 F -0.250 7.250 12 C -0.097 4.097 13 C -0.054 4.054 14 S -0.329 6.329 15 C -0.066 4.066 16 H 0.262 0.738 17 H 0.122 0.878 18 H 0.096 0.904 19 H 0.099 0.901 20 H 0.114 0.886 21 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -5.367 0.443 7.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.939 3.061 4 H -0.212 1.212 5 H -0.188 1.188 6 H -0.196 1.196 7 C -0.686 4.686 8 H 0.086 0.914 9 C 0.165 3.835 10 H 0.043 0.957 11 F -0.231 7.231 12 C -0.117 4.117 13 C -0.202 4.202 14 S -0.102 6.102 15 C -0.214 4.214 16 H 0.072 0.928 17 H 0.140 0.860 18 H 0.114 0.886 19 H 0.117 0.883 20 H 0.133 0.867 21 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.206 -5.018 0.132 7.232 hybrid contribution -0.764 -0.870 0.017 1.158 sum 4.442 -5.888 0.150 7.378 Atomic orbital electron populations 1.70865 1.08128 1.30724 1.46223 1.27430 0.96394 1.06970 0.91286 0.82920 0.74125 0.70820 0.78216 1.21186 1.18772 1.19566 1.22628 0.95539 0.92233 1.58233 0.91397 1.19159 0.87651 0.94953 0.81754 0.95661 1.92669 1.76587 1.97501 1.56381 1.22955 0.98341 0.93028 0.97404 1.24173 1.05049 0.89969 1.00979 1.88533 1.43389 1.18144 1.60173 1.24389 0.98028 0.95502 1.03444 0.92844 0.86040 0.88558 0.88280 0.86709 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 13.56 21.45 0.29 -54.99 14 2 C -0.02 -1.08 5.42 84.65 0.46 -0.63 14 3 Si 1.12 47.67 29.90 68.60 2.05 49.72 14 4 H -0.29 -12.39 7.11 99.48 0.71 -11.68 14 5 H -0.26 -10.19 7.11 99.48 0.71 -9.49 14 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 14 7 C -0.65 -34.29 8.80 25.60 0.23 -34.06 14 8 H 0.07 3.43 7.74 -2.91 -0.02 3.41 14 9 C 0.20 9.70 2.67 29.85 0.08 9.78 14 10 H 0.03 1.27 8.01 -2.39 -0.02 1.25 14 11 F -0.25 -12.86 14.40 44.97 0.65 -12.21 14 12 C -0.10 -3.65 3.20 -10.76 -0.03 -3.69 14 13 C -0.05 -1.93 7.33 72.00 0.53 -1.40 14 14 S -0.33 -10.89 24.80 -56.49 -1.40 -12.29 14 15 C -0.07 -2.11 7.44 72.00 0.54 -1.58 14 16 H 0.26 15.88 6.59 -92.71 -0.61 15.27 14 17 H 0.12 4.34 8.14 -2.39 -0.02 4.32 14 18 H 0.10 3.70 7.20 -2.39 -0.02 3.68 14 19 H 0.10 3.38 8.14 -2.39 -0.02 3.36 14 20 H 0.11 3.14 8.14 -2.39 -0.02 3.13 14 21 H 0.10 3.33 7.82 -2.39 -0.02 3.31 14 Total: -1.00 -59.61 200.64 4.76 -54.86 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.37 Total: 6.48 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 1.79 Total: -31.58 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.29 Total: -54.99 kcal Atomic # 9 Polarization: -12.86 SS G_CDS: 0.65 Total: -12.21 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.05 Total: 49.72 kcal Atomic # 16 Polarization: -10.89 SS G_CDS: -1.40 Total: -12.29 kcal Total: -59.61 4.76 -54.86 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260878971.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.497 kcal (2) G-P(sol) polarization free energy of solvation -59.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds