Wall clock time and date at job start Mon Mar 30 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00227 * 2 1 4 4 C 1.50700 * 112.49632 * 292.61475 * 3 2 1 5 5 H 1.08002 * 120.00018 * 124.04282 * 4 3 2 6 6 C 1.37880 * 120.00158 * 304.05606 * 4 3 2 7 7 N 1.31519 * 119.99348 * 354.49020 * 6 4 3 8 8 Si 1.86791 * 120.00426 * 174.49668 * 6 4 3 9 9 H 1.48503 * 109.47231 * 89.99570 * 8 6 4 10 10 H 1.48495 * 109.47577 * 209.99485 * 8 6 4 11 11 H 1.48508 * 109.47273 * 329.99689 * 8 6 4 12 12 C 1.53042 * 113.15719 * 162.77210 * 3 2 1 13 13 S 1.81429 * 89.89112 * 211.85336 * 12 3 2 14 14 C 1.53045 * 113.15167 * 62.39580 * 3 2 1 15 15 H 1.09003 * 109.47131 * 295.22089 * 1 2 3 16 16 H 1.09002 * 109.47339 * 175.22356 * 1 2 3 17 17 H 1.09002 * 109.47636 * 55.21771 * 1 2 3 18 18 H 0.97003 * 119.99771 * 180.02562 * 7 6 4 19 19 H 1.08995 * 113.14569 * 327.11390 * 12 3 2 20 20 H 1.08999 * 113.14790 * 96.59429 * 12 3 2 21 21 H 1.09001 * 113.15370 * 263.41030 * 14 3 2 22 22 H 1.08995 * 113.14739 * 32.85451 * 14 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7557 2.0500 -1.2853 5 1 1.2780 3.0184 -1.2629 6 6 2.1323 1.4948 -2.4898 7 7 2.8097 0.3676 -2.5111 8 14 1.6806 2.3434 -4.0914 9 1 2.7607 3.2885 -4.4726 10 1 1.5128 1.3264 -5.1604 11 1 0.4091 3.0901 -3.9145 12 6 3.4828 1.3085 0.4167 13 16 3.2680 2.9537 1.1508 14 6 1.6593 2.1203 1.2470 15 1 -0.3633 0.4379 0.9297 16 1 -0.3634 -1.0241 -0.0856 17 1 -0.3634 0.5862 -0.8440 18 1 3.0750 -0.0228 -3.3585 19 1 3.7218 0.5395 1.1512 20 1 4.1680 1.3037 -0.4309 21 1 0.8172 2.7955 1.0948 22 1 1.5462 1.5077 2.1414 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260882861.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:29 Heat of formation + Delta-G solvation = -40.132132 kcal Electronic energy + Delta-G solvation = -8874.986273 eV Core-core repulsion = 7135.716919 eV Total energy + Delta-G solvation = -1739.269355 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 174.046 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.30837 -35.01614 -33.77929 -27.66210 -27.49768 -26.47910 -21.71865 -18.97899 -17.26161 -16.75206 -16.05291 -15.74175 -15.55323 -14.69090 -14.07144 -13.71121 -13.08916 -12.82504 -12.67527 -12.51554 -12.08838 -11.73087 -11.31689 -10.93107 -10.62537 -10.01054 -8.56043 -8.12433 -6.31903 1.04486 1.22408 1.42991 1.44897 1.53764 2.40927 3.11903 3.47060 4.03853 4.34022 4.52800 4.61230 4.70274 4.78753 4.95514 5.10735 5.28478 5.67837 6.03084 6.66139 6.95166 7.42045 8.91719 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.046746 B = 0.021774 C = 0.017971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.837867 B = 1285.656021 C = 1557.695649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.393 6.393 3 C 0.239 3.761 4 C -0.541 4.541 5 H 0.061 0.939 6 C 0.039 3.961 7 N -0.886 5.886 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.266 1.266 12 C -0.046 4.046 13 S -0.322 6.322 14 C -0.092 4.092 15 H 0.042 0.958 16 H 0.081 0.919 17 H 0.028 0.972 18 H 0.263 0.737 19 H 0.091 0.909 20 H 0.072 0.928 21 H 0.089 0.911 22 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 0.694 3.580 4.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.312 6.312 3 C 0.198 3.802 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.165 4.165 7 N -0.522 5.522 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.195 4.195 13 S -0.098 6.098 14 C -0.240 4.240 15 H 0.060 0.940 16 H 0.099 0.901 17 H 0.046 0.954 18 H 0.072 0.928 19 H 0.109 0.891 20 H 0.090 0.910 21 H 0.108 0.892 22 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.514 1.625 3.801 4.839 hybrid contribution -0.641 -0.422 -1.142 1.376 sum -3.155 1.203 2.660 4.298 Atomic orbital electron populations 1.22431 0.81845 1.01438 0.99372 1.87811 1.19529 1.29253 1.94639 1.20202 0.87794 0.81138 0.91027 1.21128 1.41943 1.04208 0.90581 0.92127 1.25648 0.93749 0.95130 1.01956 1.70140 1.35946 1.19256 1.26881 0.85692 0.78975 0.78334 0.79471 1.20401 1.20727 1.18995 1.24449 1.03025 0.91296 1.00709 1.88047 1.17001 1.24204 1.80509 1.25202 0.96022 0.99601 1.03219 0.93990 0.90089 0.95351 0.92827 0.89089 0.90958 0.89234 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.80 10.60 113.37 1.20 3.00 14 2 O -0.39 -18.96 10.07 -148.98 -1.50 -20.46 14 3 C 0.24 11.44 0.57 -11.51 -0.01 11.44 14 4 C -0.54 -28.37 6.96 25.60 0.18 -28.19 14 5 H 0.06 3.19 7.82 -2.91 -0.02 3.17 14 6 C 0.04 2.08 5.38 84.65 0.46 2.53 14 7 N -0.89 -49.54 12.40 21.45 0.27 -49.28 14 8 Si 0.95 42.23 29.54 68.60 2.03 44.26 14 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 14 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 14 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 14 12 C -0.05 -2.17 7.15 72.00 0.51 -1.65 14 13 S -0.32 -13.95 24.26 -56.49 -1.37 -15.32 14 14 C -0.09 -3.73 6.36 72.00 0.46 -3.27 14 15 H 0.04 1.40 7.58 -2.39 -0.02 1.38 14 16 H 0.08 2.76 8.14 -2.39 -0.02 2.74 14 17 H 0.03 1.18 7.41 -2.39 -0.02 1.16 14 18 H 0.26 14.02 8.31 -92.71 -0.77 13.25 14 19 H 0.09 3.93 8.14 -2.39 -0.02 3.91 14 20 H 0.07 3.77 7.76 -2.39 -0.02 3.75 14 21 H 0.09 3.46 8.11 -2.39 -0.02 3.44 14 22 H 0.11 3.84 8.14 -2.39 -0.02 3.82 14 Total: -1.00 -57.64 206.04 3.42 -54.22 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.20 Total: 2.72 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 2.80 Total: -16.14 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.27 Total: -49.28 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.50 Total: -20.46 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: -13.95 SS G_CDS: -1.37 Total: -15.32 kcal Total: -57.64 3.42 -54.22 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260882861.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.090 kcal (2) G-P(sol) polarization free energy of solvation -57.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds