Wall clock time and date at job start Mon Mar 30 2020 01:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47963 * 110.99542 * 2 1 4 4 C 1.53936 * 86.17700 * 222.42152 * 3 2 1 5 5 C 1.52996 * 113.73599 * 138.08173 * 4 3 2 6 6 H 1.08994 * 109.47405 * 186.89390 * 5 4 3 7 7 F 1.39898 * 109.46956 * 306.89517 * 5 4 3 8 8 C 1.50702 * 109.47159 * 66.89356 * 5 4 3 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99942 * 179.72211 * 8 5 4 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 5 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 5 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 C 1.48190 * 111.06890 * 260.56715 * 2 1 3 17 17 H 1.08997 * 109.47650 * 60.00278 * 1 2 3 18 18 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47226 * 299.99875 * 1 2 3 20 20 H 1.08993 * 113.76076 * 108.10155 * 3 2 1 21 21 H 1.08999 * 113.75881 * 336.73506 * 3 2 1 22 22 H 1.09007 * 113.72777 * 269.25446 * 4 3 2 23 23 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 24 24 H 1.08997 * 113.75809 * 23.23907 * 16 2 1 25 25 H 1.09002 * 113.82400 * 251.80638 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3814 0.0000 4 6 3.0209 0.8793 -1.0361 5 6 3.2609 1.8570 -2.1882 6 1 3.8962 1.3860 -2.9382 7 9 2.0358 2.2053 -2.7670 8 6 3.9385 3.0963 -1.6626 9 1 4.1748 3.1781 -0.6119 10 6 4.2624 4.1229 -2.5240 11 7 4.8587 5.2021 -2.0662 12 14 3.8543 3.9811 -4.3414 13 1 2.4983 4.5336 -4.5888 14 1 4.8520 4.7441 -5.1337 15 1 3.8883 2.5528 -4.7464 16 6 2.0017 -0.2266 -1.3641 17 1 -0.3634 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 2.4458 1.6803 0.9482 21 1 1.3008 2.1198 -0.3940 22 1 3.9457 0.5070 -0.5953 23 1 5.0862 5.9244 -2.6722 24 1 1.3042 0.0405 -2.1580 25 1 2.4505 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260912848.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:49 Heat of formation + Delta-G solvation = -40.617637 kcal Electronic energy + Delta-G solvation = -10448.914878 eV Core-core repulsion = 8376.963051 eV Total energy + Delta-G solvation = -2071.951827 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 173.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.27439 -40.46779 -35.01652 -32.57934 -29.50788 -27.05677 -25.64371 -22.76579 -20.27065 -19.21630 -17.56516 -16.90086 -16.49319 -16.18148 -15.39972 -14.95805 -14.45354 -14.27740 -13.79864 -13.56405 -13.00239 -12.86658 -12.41410 -11.95732 -11.82122 -11.67833 -11.11611 -10.97840 -10.85230 -9.78945 -8.42329 -6.58316 1.32010 1.35450 1.45033 2.26711 2.92786 3.01795 3.59360 3.85952 4.17056 4.25100 4.37426 4.56353 4.61163 4.64910 4.80007 4.88385 4.94987 5.11625 5.24989 5.33871 5.57669 6.09528 6.12393 6.54271 7.16353 8.72276 Molecular weight = 173.09amu Principal moments of inertia in cm(-1) A = 0.076995 B = 0.014998 C = 0.013830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.573128 B = 1866.451169 C = 2024.027497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.491 5.491 3 C 0.019 3.981 4 C -0.126 4.126 5 C 0.181 3.819 6 H 0.052 0.948 7 F -0.245 7.245 8 C -0.557 4.557 9 H 0.054 0.946 10 C 0.028 3.972 11 N -0.931 5.931 12 Si 0.949 3.051 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.250 1.250 16 C 0.009 3.991 17 H 0.030 0.970 18 H 0.085 0.915 19 H 0.071 0.929 20 H 0.081 0.919 21 H 0.058 0.942 22 H 0.108 0.892 23 H 0.271 0.729 24 H 0.071 0.929 25 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -9.532 -0.676 11.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.214 5.214 3 C -0.110 4.110 4 C -0.145 4.145 5 C 0.144 3.856 6 H 0.070 0.930 7 F -0.226 7.226 8 C -0.595 4.595 9 H 0.072 0.928 10 C -0.173 4.173 11 N -0.569 5.569 12 Si 0.774 3.226 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.174 1.174 16 C -0.120 4.120 17 H 0.049 0.951 18 H 0.104 0.896 19 H 0.090 0.910 20 H 0.099 0.901 21 H 0.077 0.923 22 H 0.126 0.874 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.119 -9.817 -0.179 11.570 hybrid contribution -0.356 1.164 -1.217 1.722 sum -6.475 -8.653 -1.397 10.897 Atomic orbital electron populations 1.22892 0.88878 1.03020 1.01206 1.68472 1.10117 1.18247 1.24527 1.23707 0.96807 0.91021 0.99471 1.23397 0.99309 0.95566 0.96239 1.19553 0.78711 0.94675 0.92618 0.92994 1.92574 1.49632 1.93919 1.86502 1.21512 1.39581 1.01921 0.96476 0.92823 1.25858 0.93158 0.94557 1.03741 1.70024 1.41465 1.07702 1.37662 0.85727 0.77765 0.79610 0.79506 1.20220 1.21168 1.17377 1.24108 0.96792 0.99957 0.91099 0.95125 0.89619 0.90983 0.90071 0.92321 0.87422 0.91976 0.91083 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.29 9.65 127.69 1.23 0.94 15 2 N -0.49 -15.84 6.55 -933.46 -6.12 -21.96 15 3 C 0.02 0.70 7.12 86.41 0.62 1.32 15 4 C -0.13 -4.86 3.82 -10.15 -0.04 -4.90 15 5 C 0.18 8.38 2.68 29.85 0.08 8.46 15 6 H 0.05 2.33 7.19 -2.39 -0.02 2.32 15 7 F -0.24 -11.60 13.46 44.97 0.61 -10.99 15 8 C -0.56 -31.23 9.12 25.60 0.23 -30.99 15 9 H 0.05 3.26 7.99 -2.91 -0.02 3.24 15 10 C 0.03 1.59 5.47 84.66 0.46 2.05 15 11 N -0.93 -57.03 13.96 21.45 0.30 -56.73 15 12 Si 0.95 45.35 26.39 68.60 1.81 47.16 15 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 14 H -0.29 -13.14 7.11 99.48 0.71 -12.43 15 15 H -0.25 -11.12 6.54 99.48 0.65 -10.47 15 16 C 0.01 0.28 7.44 86.36 0.64 0.93 15 17 H 0.03 0.85 7.63 -2.39 -0.02 0.83 15 18 H 0.09 1.91 8.14 -2.38 -0.02 1.89 15 19 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.08 3.04 8.14 -2.39 -0.02 3.02 15 21 H 0.06 2.39 7.44 -2.39 -0.02 2.37 15 22 H 0.11 4.01 8.14 -2.38 -0.02 3.99 15 23 H 0.27 15.48 8.31 -92.71 -0.77 14.71 15 24 H 0.07 2.30 6.82 -2.39 -0.02 2.28 15 25 H 0.11 2.86 8.14 -2.39 -0.02 2.84 15 Total: -1.00 -61.81 212.51 0.93 -60.89 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.10 Total: 3.83 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 3.23 Total: -22.19 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -5.82 Total: -78.69 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 0.61 Total: -10.99 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.81 Total: 47.16 kcal Total: -61.81 0.93 -60.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260912848.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.268 kcal (2) G-P(sol) polarization free energy of solvation -61.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds