Wall clock time and date at job start Mon Mar 30 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38624 * 120.29169 * 2 1 4 4 N 1.32057 * 121.31680 * 179.97438 * 3 2 1 5 5 C 1.31495 * 121.98783 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.80314 * 179.97438 * 5 4 3 7 7 C 1.40717 * 120.39439 * 359.97438 * 5 4 3 8 8 C 1.41419 * 120.65840 * 180.02562 * 7 5 4 9 9 H 1.07995 * 119.99907 * 24.94630 * 8 7 5 10 10 C 1.39945 * 119.99673 * 204.94950 * 8 7 5 11 11 N 1.30821 * 120.00649 * 13.93213 * 10 8 7 12 12 Si 1.86806 * 119.99833 * 193.93226 * 10 8 7 13 13 H 1.48496 * 109.46951 * 59.99848 * 12 10 8 14 14 H 1.48501 * 109.47253 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46742 * 299.99866 * 12 10 8 16 16 C 1.38020 * 120.28552 * 179.71987 * 2 1 3 17 17 H 1.09010 * 109.47153 * 89.99815 * 1 2 3 18 18 H 1.08990 * 109.47606 * 209.99924 * 1 2 3 19 19 H 1.08997 * 109.46894 * 330.00692 * 1 2 3 20 20 H 1.07994 * 119.33881 * 359.97022 * 3 2 1 21 21 H 1.09003 * 109.46686 * 89.99767 * 6 5 4 22 22 H 1.09004 * 109.46707 * 209.99508 * 6 5 4 23 23 H 1.08993 * 109.47081 * 329.99771 * 6 5 4 24 24 H 0.96996 * 120.00233 * 179.97438 * 11 10 8 25 25 H 1.08003 * 120.89636 * 359.97438 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1970 0.0000 4 7 3.5266 1.2206 0.0005 5 6 4.2430 0.1180 0.0005 6 6 5.7476 0.2023 0.0005 7 6 3.6131 -1.1404 0.0006 8 6 4.3781 -2.3298 0.0011 9 1 5.3832 -2.3251 0.3960 10 6 3.8326 -3.5128 -0.5101 11 7 2.7402 -3.4724 -1.2287 12 14 4.6643 -5.1497 -0.1663 13 1 4.7137 -5.3815 1.2997 14 1 3.8950 -6.2418 -0.8150 15 1 6.0457 -5.1270 -0.7108 16 6 2.2030 -1.1918 0.0058 17 1 -0.3634 0.0000 -1.0278 18 1 -0.3634 -0.8899 0.5138 19 1 -0.3633 0.8900 0.5137 20 1 1.6602 2.1287 -0.0005 21 1 6.1103 0.2227 1.0282 22 1 6.1601 -0.6660 -0.5132 23 1 6.0605 1.1112 -0.5133 24 1 2.3623 -4.2924 -1.5833 25 1 1.6824 -2.1381 0.0109 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260955882.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:32 Heat of formation + Delta-G solvation = -12.262828 kcal Electronic energy + Delta-G solvation = -10074.193284 eV Core-core repulsion = 8243.784187 eV Total energy + Delta-G solvation = -1830.409097 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.34526 -35.96074 -34.56249 -32.46636 -30.03029 -27.62164 -25.94253 -23.45111 -21.58495 -18.95822 -17.46441 -16.45178 -16.36067 -15.17251 -15.02616 -14.04939 -13.97040 -13.53499 -13.27850 -13.23518 -13.09819 -12.70393 -12.59856 -12.52381 -12.14538 -11.49525 -11.18292 -10.01640 -9.82858 -9.21329 -8.64648 -6.42472 0.77757 1.06586 1.39379 1.50844 1.55031 2.19033 2.73241 3.65536 4.07879 4.39505 4.52577 4.60645 4.74301 4.89430 4.93459 4.99690 5.13350 5.18122 5.21507 5.40553 5.56544 5.90509 5.98272 6.10102 6.53987 6.79277 6.85164 7.76083 8.27829 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.045177 B = 0.016717 C = 0.012615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.632310 B = 1674.556690 C = 2218.995964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.133 4.133 3 C -0.046 4.046 4 N -0.486 5.486 5 C -0.027 4.027 6 C -0.064 4.064 7 C 0.037 3.963 8 C -0.475 4.475 9 H 0.089 0.911 10 C 0.032 3.968 11 N -0.824 5.824 12 Si 0.988 3.012 13 H -0.260 1.260 14 H -0.269 1.269 15 H -0.256 1.256 16 C -0.162 4.162 17 H 0.067 0.933 18 H 0.059 0.941 19 H 0.079 0.921 20 H 0.147 0.853 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.290 0.710 25 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -1.286 1.467 2.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.203 4.203 4 N -0.194 5.194 5 C -0.168 4.168 6 C -0.122 4.122 7 C 0.033 3.967 8 C -0.504 4.504 9 H 0.107 0.893 10 C -0.183 4.183 11 N -0.450 5.450 12 Si 0.808 3.192 13 H -0.184 1.184 14 H -0.193 1.193 15 H -0.180 1.180 16 C -0.188 4.188 17 H 0.086 0.914 18 H 0.078 0.922 19 H 0.098 0.902 20 H 0.164 0.836 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.101 0.899 25 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.333 -0.620 1.319 1.495 hybrid contribution -0.318 -1.431 -0.061 1.468 sum -0.651 -2.051 1.258 2.493 Atomic orbital electron populations 1.20575 0.89601 1.02546 1.02044 1.20959 0.97946 0.94068 1.00488 1.22098 0.89704 0.96825 1.11696 1.66832 1.08664 1.32575 1.11345 1.21618 0.96881 0.88379 1.09955 1.20232 0.89125 1.01524 1.01274 1.18762 0.93438 0.94012 0.90534 1.19830 1.01542 0.93136 1.35938 0.89267 1.26880 0.95076 1.04721 0.91631 1.69835 1.19479 1.31829 1.23823 0.85161 0.79181 0.75156 0.79729 1.18379 1.19291 1.18010 1.21688 0.94386 0.97093 1.05601 0.91387 0.92238 0.90182 0.83614 0.92042 0.91526 0.92197 0.89896 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 10.03 71.24 0.71 -2.51 15 2 C -0.13 -6.25 5.89 -19.82 -0.12 -6.36 15 3 C -0.05 -2.19 10.85 84.75 0.92 -1.27 15 4 N -0.49 -24.99 10.25 -181.75 -1.86 -26.85 15 5 C -0.03 -1.39 6.86 43.21 0.30 -1.10 15 6 C -0.06 -2.78 9.58 71.24 0.68 -2.09 15 7 C 0.04 2.02 5.59 -21.19 -0.12 1.90 15 8 C -0.48 -24.94 8.17 23.47 0.19 -24.75 15 9 H 0.09 4.40 6.85 -2.91 -0.02 4.38 15 10 C 0.03 1.58 5.24 85.26 0.45 2.02 15 11 N -0.82 -42.18 10.82 21.83 0.24 -41.95 15 12 Si 0.99 36.82 29.58 68.60 2.03 38.85 15 13 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 14 H -0.27 -9.51 7.11 99.48 0.71 -8.81 15 15 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 16 C -0.16 -8.63 8.47 22.92 0.19 -8.43 15 17 H 0.07 2.28 8.14 -2.38 -0.02 2.26 15 18 H 0.06 2.04 8.09 -2.39 -0.02 2.02 15 19 H 0.08 2.39 8.09 -2.39 -0.02 2.37 15 20 H 0.15 5.88 8.06 -2.91 -0.02 5.86 15 21 H 0.06 2.43 8.14 -2.39 -0.02 2.41 15 22 H 0.07 2.82 6.76 -2.38 -0.02 2.81 15 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.29 13.40 8.30 -92.71 -0.77 12.63 15 25 H 0.12 6.36 6.18 -2.91 -0.02 6.34 15 Total: -1.00 -59.92 219.40 4.79 -55.13 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.18 Total: 17.40 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 3.21 Total: -42.59 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -1.63 Total: -68.79 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -59.92 4.79 -55.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955882.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.872 kcal (2) G-P(sol) polarization free energy of solvation -59.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds