Wall clock time and date at job start Mon Mar 30 2020 02:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.30167 * 57.83637 * 9 7 2 11 11 C 1.54451 * 110.33641 * 179.97438 * 9 7 2 12 12 C 1.54487 * 101.87030 * 93.30774 * 11 9 7 13 13 C 1.51190 * 104.92077 * 25.54180 * 12 11 9 14 14 C 1.41509 * 142.39799 * 163.13508 * 13 12 11 15 15 C 1.34442 * 106.80439 * 180.02562 * 14 13 12 16 16 O 1.34196 * 108.43151 * 359.97438 * 15 14 13 17 17 C 1.34285 * 110.58295 * 343.14951 * 13 12 11 18 18 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 19 19 H 1.09000 * 110.95249 * 211.45162 * 11 9 7 20 20 H 1.09004 * 110.94929 * 335.16881 * 11 9 7 21 21 H 1.08995 * 110.34688 * 144.40048 * 12 11 9 22 22 H 1.09001 * 110.35053 * 266.56736 * 12 11 9 23 23 H 1.08007 * 126.59715 * 359.97438 * 14 13 12 24 24 H 1.08007 * 125.78521 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5911 -2.5548 -0.8651 11 6 2.2370 -3.6881 0.0005 12 6 2.3727 -3.9884 1.5099 13 6 1.0873 -3.4824 2.1245 14 6 0.2913 -3.5718 3.2911 15 6 -0.7808 -2.7854 3.0912 16 8 -0.6772 -2.2280 1.8749 17 6 0.4572 -2.6484 1.2816 18 1 -0.4850 -0.8401 -0.0004 19 1 1.8173 -4.5424 -0.5306 20 1 3.1969 -3.3983 -0.4270 21 1 2.4754 -5.0608 1.6751 22 1 3.2287 -3.4576 1.9265 23 1 0.5036 -4.1593 4.1721 24 1 -1.5881 -2.6283 3.7913 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956207.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:14 Heat of formation + Delta-G solvation = -4.613071 kcal Electronic energy + Delta-G solvation = -10509.822209 eV Core-core repulsion = 8582.026168 eV Total energy + Delta-G solvation = -1927.796041 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.39816 -38.21112 -34.92956 -32.63760 -28.91743 -28.84916 -25.73405 -22.76721 -21.62519 -20.57307 -19.11893 -17.30707 -16.90117 -15.94516 -15.64152 -15.39444 -14.39814 -13.98818 -13.59968 -13.35982 -12.75995 -12.57449 -12.16864 -12.13171 -11.98058 -11.60034 -10.95096 -10.57788 -10.36640 -8.95872 -8.64825 -6.43437 1.07680 1.51014 1.59129 1.77878 1.85045 2.11123 2.55249 3.18100 3.71231 4.07802 4.23232 4.32116 4.41932 4.70350 4.81742 4.90387 5.07106 5.17866 5.26322 5.41137 5.49290 5.87129 5.93110 6.15614 6.48883 6.57137 7.40037 8.71691 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.047868 B = 0.018083 C = 0.015049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.799072 B = 1548.017335 C = 1860.117028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.034 4.034 3 Si 1.116 2.884 4 H -0.286 1.286 5 H -0.261 1.261 6 H -0.274 1.274 7 C -0.604 4.604 8 H 0.063 0.937 9 C 0.094 3.906 10 H 0.000 1.000 11 C -0.096 4.096 12 C -0.031 4.031 13 C -0.256 4.256 14 C -0.197 4.197 15 C -0.079 4.079 16 O -0.193 6.193 17 C -0.024 4.024 18 H 0.263 0.737 19 H 0.075 0.925 20 H 0.085 0.915 21 H 0.088 0.912 22 H 0.067 0.933 23 H 0.172 0.828 24 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 -5.849 4.307 7.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.234 4.234 3 Si 0.937 3.063 4 H -0.212 1.212 5 H -0.186 1.186 6 H -0.200 1.200 7 C -0.641 4.641 8 H 0.081 0.919 9 C 0.075 3.925 10 H 0.018 0.982 11 C -0.134 4.134 12 C -0.068 4.068 13 C -0.257 4.257 14 C -0.216 4.216 15 C -0.145 4.145 16 O -0.089 6.089 17 C -0.075 4.075 18 H 0.074 0.926 19 H 0.094 0.906 20 H 0.103 0.897 21 H 0.106 0.894 22 H 0.085 0.915 23 H 0.189 0.811 24 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.567 -4.036 4.163 6.341 hybrid contribution -0.260 -1.573 0.211 1.609 sum 2.306 -5.609 4.374 7.478 Atomic orbital electron populations 1.70833 1.07987 1.30710 1.45964 1.27430 0.96623 1.06841 0.92528 0.82954 0.74149 0.71082 0.78080 1.21178 1.18598 1.19955 1.22276 0.94541 0.91699 1.55611 0.91899 1.18446 0.91268 0.96801 0.86015 0.98218 1.22327 0.99094 0.95725 0.96233 1.20313 0.92173 1.00626 0.93692 1.21651 1.01417 1.05948 0.96691 1.21418 0.95537 1.05038 0.99624 1.24753 1.03355 0.99692 0.86712 1.83941 1.38571 1.58391 1.28029 1.24843 0.85390 0.95557 1.01738 0.92639 0.90600 0.89688 0.89392 0.91462 0.81090 0.74961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.00 13.43 21.45 0.29 -57.71 14 2 C -0.03 -1.97 5.34 84.65 0.45 -1.52 14 3 Si 1.12 50.74 29.90 68.60 2.05 52.80 14 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 14 5 H -0.26 -10.76 7.11 99.48 0.71 -10.05 14 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 14 7 C -0.60 -34.31 8.50 25.60 0.22 -34.09 14 8 H 0.06 3.41 7.58 -2.91 -0.02 3.39 14 9 C 0.09 4.93 2.46 -11.56 -0.03 4.90 14 10 H 0.00 -0.01 7.94 -2.39 -0.02 -0.03 14 11 C -0.10 -3.92 6.64 31.59 0.21 -3.71 14 12 C -0.03 -1.18 6.78 30.51 0.21 -0.98 14 13 C -0.26 -11.45 6.96 -19.81 -0.14 -11.59 14 14 C -0.20 -7.59 10.91 22.21 0.24 -7.35 14 15 C -0.08 -3.14 12.08 66.95 0.81 -2.33 14 16 O -0.19 -9.99 9.70 -5.82 -0.06 -10.05 14 17 C -0.02 -1.26 6.29 25.02 0.16 -1.10 14 18 H 0.26 16.97 5.55 -92.71 -0.51 16.46 14 19 H 0.08 2.70 8.14 -2.39 -0.02 2.68 14 20 H 0.08 3.24 7.74 -2.39 -0.02 3.22 14 21 H 0.09 2.72 8.14 -2.39 -0.02 2.70 14 22 H 0.07 2.54 8.14 -2.39 -0.02 2.52 14 23 H 0.17 5.06 8.06 -2.91 -0.02 5.04 14 24 H 0.23 6.62 8.06 -2.91 -0.02 6.59 14 Total: -1.00 -69.52 209.68 5.85 -63.67 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.44 Total: 9.07 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 2.13 Total: -57.77 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.29 Total: -57.71 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.06 Total: -10.05 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.05 Total: 52.80 kcal Total: -69.52 5.85 -63.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956207.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.053 kcal (2) G-P(sol) polarization free energy of solvation -69.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds