Wall clock time and date at job start Mon Mar 30 2020 01:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99405 * 2 1 4 4 H 1.48501 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47094 * 299.99835 * 3 2 1 6 6 H 1.48497 * 109.47081 * 60.00465 * 3 2 1 7 7 C 1.37874 * 120.00650 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00683 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99670 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47136 * 179.97438 * 9 7 2 11 11 O 1.42102 * 109.47085 * 63.60688 * 10 9 7 12 12 C 1.81399 * 103.00088 * 179.97438 * 10 9 7 13 13 C 1.52998 * 117.49791 * 253.74462 * 12 10 9 14 14 C 1.53001 * 117.49760 * 185.08642 * 12 10 9 15 15 H 0.96993 * 120.00193 * 359.97438 * 1 2 3 16 16 H 1.09002 * 109.47378 * 59.99872 * 9 7 2 17 17 H 1.09000 * 109.47022 * 299.99473 * 9 7 2 18 18 H 1.08992 * 115.54697 * 39.41938 * 12 10 9 19 19 H 1.09000 * 117.49870 * 0.02562 * 13 12 10 20 20 H 1.09003 * 117.49449 * 145.01978 * 13 12 10 21 21 H 1.09003 * 117.49947 * 214.97967 * 14 12 10 22 22 H 1.08997 * 117.49818 * 0.02562 * 14 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4301 -3.8778 0.0005 11 8 3.1905 -3.8508 1.2006 12 6 1.3519 -5.3366 0.0013 13 6 1.2380 -6.1302 1.3045 14 6 2.0192 -6.7082 0.1218 15 1 -0.4850 0.8400 0.0004 16 1 0.6249 -2.5571 -0.8897 17 1 0.6243 -2.5567 0.8903 18 1 0.4614 -5.2633 -0.6228 19 1 1.8105 -5.7754 2.1615 20 1 0.2724 -6.5792 1.5375 21 1 1.5674 -7.5373 -0.4227 22 1 3.1060 -6.7339 0.2010 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260981716.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:55 Heat of formation + Delta-G solvation = -21.148539 kcal Electronic energy + Delta-G solvation = -8224.761844 eV Core-core repulsion = 6486.315680 eV Total energy + Delta-G solvation = -1738.446164 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 174.046 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -36.31693 -34.54952 -33.10018 -28.57367 -23.46962 -22.15626 -21.93755 -16.90963 -16.44092 -15.62871 -14.65025 -14.38368 -13.38128 -12.88091 -12.41977 -11.97321 -11.33504 -11.21573 -10.97194 -10.72103 -10.40793 -10.37953 -10.20201 -9.53025 -8.83996 -8.55477 -7.13974 -6.15981 -4.22312 2.56793 3.26026 3.33506 3.39757 3.72068 4.10542 4.36286 4.72312 5.20532 5.25827 5.29137 5.43179 5.78064 5.99594 6.27797 6.36700 7.07393 7.17015 7.71136 8.03730 8.82356 9.42359 10.96043 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.101930 B = 0.011900 C = 0.011193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 274.631595 B = 2352.307379 C = 2500.958073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.065 0.935 9 C -0.252 4.252 10 S 1.228 4.772 11 O -0.868 6.868 12 C -0.483 4.483 13 C -0.168 4.168 14 C -0.139 4.139 15 H 0.263 0.737 16 H 0.071 0.929 17 H 0.039 0.961 18 H 0.131 0.869 19 H 0.098 0.902 20 H 0.089 0.911 21 H 0.095 0.905 22 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 -8.279 -4.023 9.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.083 0.917 9 C -0.393 4.393 10 S 1.429 4.571 11 O -0.863 6.863 12 C -0.596 4.596 13 C -0.206 4.206 14 C -0.177 4.177 15 H 0.073 0.927 16 H 0.089 0.911 17 H 0.058 0.942 18 H 0.149 0.851 19 H 0.117 0.883 20 H 0.107 0.893 21 H 0.113 0.887 22 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.112 -8.205 -4.004 9.645 hybrid contribution -1.301 0.929 1.776 2.389 sum 1.811 -7.275 -2.229 7.822 Atomic orbital electron populations 1.69979 1.06233 1.26985 1.49346 1.24992 0.94926 0.99441 0.94394 0.86396 0.80290 0.82848 0.77767 1.19263 1.20571 1.20848 1.20523 0.92838 0.89112 1.52850 0.91688 1.24851 1.06060 1.05524 1.02881 1.69447 0.89509 0.85728 1.12455 1.92983 1.57231 1.84385 1.51748 1.29921 1.14512 1.09863 1.05347 1.22762 1.02048 1.03766 0.91996 1.22555 0.99217 0.94228 1.01711 0.92714 0.91053 0.94203 0.85094 0.88332 0.89263 0.88667 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 14 2 C 0.07 1.89 5.46 -17.82 -0.10 1.80 14 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 14 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 14 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 14 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 14 7 C -0.51 -14.47 9.13 -34.44 -0.31 -14.79 14 8 H 0.06 1.79 7.71 -52.49 -0.40 1.38 14 9 C -0.25 -6.34 5.68 36.01 0.20 -6.14 14 10 S 1.23 24.46 13.45 -107.50 -1.45 23.01 14 11 O -0.87 -22.18 17.39 -35.23 -0.61 -22.79 14 12 C -0.48 -8.05 6.35 -26.73 -0.17 -8.22 14 13 C -0.17 -2.81 10.14 -26.69 -0.27 -3.08 14 14 C -0.14 -1.97 10.30 -26.69 -0.27 -2.25 14 15 H 0.26 7.28 8.31 -40.82 -0.34 6.94 14 16 H 0.07 1.72 8.14 -51.92 -0.42 1.30 14 17 H 0.04 1.11 8.14 -51.92 -0.42 0.69 14 18 H 0.13 1.99 8.14 -51.93 -0.42 1.57 14 19 H 0.10 1.87 7.65 -51.93 -0.40 1.47 14 20 H 0.09 1.32 8.14 -51.93 -0.42 0.90 14 21 H 0.09 1.10 8.14 -51.93 -0.42 0.68 14 22 H 0.10 1.30 8.14 -51.93 -0.42 0.88 14 LS Contribution 214.57 15.07 3.23 3.23 Total: -1.00 -34.23 214.57 -6.51 -40.73 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: -0.92 Total: -32.68 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.61 Total: -22.79 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 24.46 SS G_CDS: -1.45 Total: 23.01 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -34.23 -6.51 -40.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260981716.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.585 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds