Wall clock time and date at job start Mon Mar 30 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99624 * 2 1 4 4 H 1.48503 * 109.47273 * 240.00071 * 3 2 1 5 5 H 1.48500 * 109.47419 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47062 * 120.00268 * 3 2 1 7 7 C 1.37872 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99957 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.24492 * 57.99524 * 9 7 2 11 11 C 1.54357 * 110.27551 * 180.02562 * 9 7 2 12 12 C 1.54360 * 102.87627 * 145.58589 * 11 9 7 13 13 C 1.51092 * 105.29936 * 333.37173 * 12 11 9 14 14 C 1.34431 * 143.78796 * 197.19713 * 13 12 11 15 15 O 1.34334 * 108.39404 * 180.02562 * 14 13 12 16 16 C 1.34338 * 109.46848 * 359.97438 * 15 14 13 17 17 C 1.34443 * 108.39111 * 359.97438 * 16 15 14 18 18 H 0.97000 * 119.99891 * 359.97438 * 1 2 3 19 19 H 1.08998 * 110.73636 * 263.92785 * 11 9 7 20 20 H 1.08996 * 110.73388 * 27.23887 * 11 9 7 21 21 H 1.08995 * 110.28025 * 92.33050 * 12 11 9 22 22 H 1.09004 * 110.27831 * 214.41962 * 12 11 9 23 23 H 1.08004 * 125.80337 * 359.97438 * 14 13 12 24 24 H 1.08000 * 125.80557 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5928 -2.5546 -0.8675 11 6 2.2376 -3.6863 -0.0005 12 6 1.5027 -4.7443 0.8499 13 6 0.6009 -3.9578 1.7725 14 6 -0.1254 -4.0311 2.9014 15 8 -0.7021 -2.8364 3.1127 16 6 -0.3536 -1.9907 2.1288 17 6 0.4549 -2.6430 1.2754 18 1 -0.4850 0.8401 0.0004 19 1 2.4013 -4.0520 -1.0142 20 1 3.1813 -3.4039 0.4660 21 1 0.9105 -5.3985 0.2101 22 1 2.2188 -5.3277 1.4286 23 1 -0.2285 -4.9027 3.5309 24 1 -0.6685 -0.9616 2.0392 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983840.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:00 Heat of formation + Delta-G solvation = 11.906790 kcal Electronic energy + Delta-G solvation = -10414.769862 eV Core-core repulsion = 8487.690176 eV Total energy + Delta-G solvation = -1927.079686 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.51411 -36.29481 -32.57276 -29.53758 -28.80157 -26.65463 -23.49469 -21.31018 -18.95819 -18.90235 -16.42067 -15.74206 -14.86396 -14.43836 -13.61920 -13.32440 -12.85411 -12.08758 -11.74237 -11.53448 -10.89022 -10.67529 -10.53873 -10.31264 -10.06735 -9.56084 -9.14400 -8.43419 -8.01604 -7.19998 -6.04053 -4.08544 2.85839 3.31263 3.35768 3.38716 3.93225 4.24750 4.43490 5.27100 5.34275 5.88704 5.94333 6.03699 6.29236 6.52079 6.69695 6.86141 6.98142 7.24810 7.31793 7.45682 7.74391 7.84625 7.95614 8.31677 8.45638 8.95300 9.55724 11.04860 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.052540 B = 0.016900 C = 0.013827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.800404 B = 1656.403285 C = 2024.577992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.100 3.900 10 H 0.041 0.959 11 C -0.112 4.112 12 C -0.041 4.041 13 C -0.225 4.225 14 C -0.067 4.067 15 O -0.195 6.195 16 C -0.032 4.032 17 C -0.126 4.126 18 H 0.261 0.739 19 H 0.056 0.944 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.184 0.816 24 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -5.323 2.619 5.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.082 3.918 10 H 0.059 0.941 11 C -0.150 4.150 12 C -0.078 4.078 13 C -0.226 4.226 14 C -0.134 4.134 15 O -0.094 6.094 16 C -0.097 4.097 17 C -0.127 4.127 18 H 0.071 0.929 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.201 0.799 24 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.400 -5.125 2.836 5.871 hybrid contribution 0.505 0.930 -0.054 1.060 sum 0.905 -4.195 2.782 5.114 Atomic orbital electron populations 1.69933 1.05859 1.26570 1.50571 1.24982 0.94908 0.99044 0.95025 0.86666 0.79673 0.83099 0.78639 1.20244 1.21253 1.20301 1.21191 0.92824 0.90298 1.50086 0.92440 1.17786 0.91377 0.92565 0.90057 0.94095 1.22429 0.99177 0.95657 0.97733 1.20365 0.95621 0.96709 0.95144 1.21540 1.03748 0.99466 0.97887 1.22542 1.02265 0.88633 0.99974 1.84107 1.59679 1.19900 1.45669 1.23604 1.02479 0.95556 0.88089 1.21635 0.99171 0.91602 1.00318 0.92922 0.92529 0.92070 0.91943 0.92761 0.79918 0.77671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 10.85 55.43 0.60 -24.34 14 2 C 0.06 1.68 5.31 -17.82 -0.09 1.59 14 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 14 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 14 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 14 7 C -0.51 -14.00 8.50 -34.44 -0.29 -14.30 14 8 H 0.06 1.56 7.61 -52.49 -0.40 1.16 14 9 C 0.10 2.60 2.76 -92.02 -0.25 2.34 14 10 H 0.04 1.14 8.14 -51.93 -0.42 0.72 14 11 C -0.11 -2.39 6.53 -25.31 -0.17 -2.55 14 12 C -0.04 -0.79 6.75 -26.98 -0.18 -0.97 14 13 C -0.22 -4.94 6.95 -104.60 -0.73 -5.67 14 14 C -0.07 -1.34 12.09 29.39 0.36 -0.99 14 15 O -0.20 -4.34 10.65 5.53 0.06 -4.29 14 16 C -0.03 -0.79 11.38 29.39 0.33 -0.45 14 17 C -0.13 -3.19 5.70 -104.60 -0.60 -3.78 14 18 H 0.26 6.97 8.31 -40.82 -0.34 6.63 14 19 H 0.06 1.08 8.14 -51.93 -0.42 0.66 14 20 H 0.06 1.30 7.77 -51.93 -0.40 0.89 14 21 H 0.06 1.09 8.14 -51.93 -0.42 0.67 14 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 14 23 H 0.18 2.76 8.06 -52.48 -0.42 2.34 14 24 H 0.21 5.16 6.75 -52.49 -0.35 4.81 14 LS Contribution 209.40 15.07 3.16 3.16 Total: -1.00 -29.13 209.40 -5.23 -34.37 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -2.41 Total: -0.25 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -1.62 Total: -24.78 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.60 Total: -24.34 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: 0.06 Total: -4.29 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -29.13 -5.23 -34.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983840.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.274 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds