Wall clock time and date at job start Mon Mar 30 2020 02:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30083 * 125.75774 * 2 1 4 4 O 1.41410 * 109.37793 * 180.02562 * 3 2 1 5 5 C 1.35046 * 108.29563 * 0.02562 * 4 3 2 6 6 C 1.39228 * 126.57180 * 180.26554 * 5 4 3 7 7 H 1.08005 * 119.99652 * 179.68731 * 6 5 4 8 8 C 1.40762 * 120.00284 * 359.68504 * 6 5 4 9 9 N 1.30393 * 120.00115 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99990 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47379 * 59.99447 * 10 8 6 12 12 H 1.48498 * 109.47301 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46981 * 299.99919 * 10 8 6 14 14 C 1.41125 * 106.84714 * 359.97438 * 5 4 3 15 15 C 1.43201 * 126.49908 * 180.02562 * 14 5 4 16 16 N 3.59294 * 90.69261 * 179.97438 * 2 1 3 17 17 H 1.08998 * 109.46592 * 269.99775 * 1 2 3 18 18 H 1.08999 * 109.47149 * 29.99759 * 1 2 3 19 19 H 1.09004 * 109.47035 * 150.00013 * 1 2 3 20 20 H 0.96996 * 119.99594 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2672 1.0556 0.0000 4 8 3.6239 0.6568 -0.0006 5 6 3.6691 -0.6929 -0.0015 6 6 4.8143 -1.4846 0.0028 7 1 4.7266 -2.5611 0.0066 8 6 6.0865 -0.8821 0.0022 9 7 6.1925 0.4175 -0.0019 10 14 7.6230 -1.9445 0.0074 11 1 7.6334 -2.8059 -1.2022 12 1 8.8264 -1.0744 0.0064 13 1 7.6308 -2.7978 1.2227 14 6 2.3328 -1.1468 -0.0009 15 6 1.8966 -2.5107 -0.0010 16 7 1.5505 -3.5927 0.0016 17 1 -0.3632 0.0000 1.0277 18 1 -0.3633 0.8900 -0.5138 19 1 -0.3633 -0.8900 -0.5139 20 1 7.0691 0.8325 -0.0027 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260996315.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:24 Heat of formation + Delta-G solvation = 37.682240 kcal Electronic energy + Delta-G solvation = -9763.084320 eV Core-core repulsion = 7733.581998 eV Total energy + Delta-G solvation = -2029.502322 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.048 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.75791 -35.18546 -34.47673 -32.79770 -30.07565 -27.59338 -26.33347 -21.56840 -19.85249 -17.65050 -16.79935 -15.49186 -14.39335 -14.10420 -13.39027 -12.58011 -12.40206 -12.26590 -12.07399 -11.82970 -11.76090 -11.59818 -11.25327 -10.98504 -10.39657 -9.93829 -9.71966 -9.08868 -7.86647 -7.42484 -5.35413 2.53113 2.79386 2.84010 3.06627 3.15914 3.51648 3.90939 4.36104 4.48486 4.97602 5.41367 5.72998 5.90511 6.05974 6.29024 6.44061 6.65244 6.85495 7.38034 7.64864 7.89937 8.05784 8.93549 8.98516 9.51703 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.053111 B = 0.015245 C = 0.011921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.074724 B = 1836.216907 C = 2348.145904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.155 3.845 3 N -0.409 5.409 4 O -0.079 6.079 5 C 0.263 3.737 6 C -0.392 4.392 7 H 0.113 0.887 8 C 0.064 3.936 9 N -0.724 5.724 10 Si 0.935 3.065 11 H -0.255 1.255 12 H -0.269 1.269 13 H -0.255 1.255 14 C -0.387 4.387 15 C 0.329 3.671 16 N -0.528 5.528 17 H 0.075 0.925 18 H 0.071 0.929 19 H 0.070 0.930 20 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 0.093 0.025 1.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.016 4.016 3 N -0.165 5.165 4 O -0.082 6.082 5 C 0.202 3.798 6 C -0.421 4.421 7 H 0.131 0.869 8 C -0.165 4.165 9 N -0.346 5.346 10 Si 0.756 3.244 11 H -0.179 1.179 12 H -0.193 1.193 13 H -0.179 1.179 14 C -0.404 4.404 15 C 0.021 3.979 16 N -0.210 5.210 17 H 0.094 0.906 18 H 0.090 0.910 19 H 0.089 0.911 20 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.803 0.042 0.029 0.804 hybrid contribution 0.798 -0.744 0.003 1.092 sum 1.601 -0.702 0.032 1.749 Atomic orbital electron populations 1.20209 0.88030 1.02698 1.02657 1.22427 0.96108 0.90969 0.92089 1.79727 0.86131 1.18238 1.32444 1.89382 1.20420 1.18112 1.80250 1.19919 0.91955 0.83289 0.84658 1.19249 0.87902 0.95368 1.39570 0.86920 1.26507 1.02443 0.95784 0.91780 1.69567 1.29069 1.10972 1.24944 0.85881 0.77527 0.79982 0.81013 1.17864 1.19318 1.17869 1.16608 0.91367 0.86030 1.46377 1.24681 0.91757 0.91501 0.89950 1.81043 1.09730 1.11595 1.18676 0.90597 0.91019 0.91076 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.26 36.01 0.37 -0.97 14 2 C 0.15 3.54 7.23 -82.16 -0.59 2.95 14 3 N -0.41 -10.36 12.85 33.85 0.43 -9.93 14 4 O -0.08 -2.16 10.46 7.01 0.07 -2.09 14 5 C 0.26 6.89 6.92 -38.12 -0.26 6.63 14 6 C -0.39 -9.61 9.12 -38.26 -0.35 -9.95 14 7 H 0.11 2.63 7.74 -52.48 -0.41 2.23 14 8 C 0.06 1.44 5.51 -17.21 -0.09 1.35 14 9 N -0.72 -17.05 12.02 55.59 0.67 -16.38 14 10 Si 0.93 16.31 29.57 -169.99 -5.03 11.29 14 11 H -0.25 -4.41 7.11 56.52 0.40 -4.01 14 12 H -0.27 -4.47 7.11 56.52 0.40 -4.07 14 13 H -0.25 -4.41 7.11 56.52 0.40 -4.01 14 14 C -0.39 -9.56 6.06 -105.71 -0.64 -10.20 14 15 C 0.33 7.93 15.11 -22.47 -0.34 7.59 14 16 N -0.53 -12.80 18.54 41.83 0.78 -12.03 14 17 H 0.08 1.16 8.14 -51.93 -0.42 0.74 14 18 H 0.07 1.09 8.14 -51.93 -0.42 0.67 14 19 H 0.07 1.16 7.97 -51.93 -0.41 0.74 14 20 H 0.30 6.18 8.29 -40.82 -0.34 5.85 14 LS Contribution 205.24 15.07 3.09 3.09 Total: -1.00 -27.82 205.24 -2.69 -30.51 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -0.80 Total: -1.86 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.91 Total: -2.61 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 1.88 Total: -38.33 kcal Atomic # 8 Polarization: -2.16 SS G_CDS: 0.07 Total: -2.09 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.03 Total: 11.29 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -27.82 -2.69 -30.51 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260996315.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.197 kcal (2) G-P(sol) polarization free energy of solvation -27.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds