Wall clock time and date at job start Mon Mar 30 2020 02:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30083 * 125.75774 * 2 1 4 4 O 1.41410 * 109.37793 * 180.02562 * 3 2 1 5 5 C 1.35046 * 108.29563 * 0.02562 * 4 3 2 6 6 C 1.39228 * 126.57180 * 180.26554 * 5 4 3 7 7 H 1.08005 * 119.99652 * 179.68731 * 6 5 4 8 8 C 1.40762 * 120.00284 * 359.68504 * 6 5 4 9 9 N 1.30393 * 120.00115 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99990 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47379 * 59.99447 * 10 8 6 12 12 H 1.48498 * 109.47301 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46981 * 299.99919 * 10 8 6 14 14 C 1.41125 * 106.84714 * 359.97438 * 5 4 3 15 15 C 1.43201 * 126.49908 * 180.02562 * 14 5 4 16 16 N 3.59294 * 90.69261 * 179.97438 * 2 1 3 17 17 H 1.08998 * 109.46592 * 269.99775 * 1 2 3 18 18 H 1.08999 * 109.47149 * 29.99759 * 1 2 3 19 19 H 1.09004 * 109.47035 * 150.00013 * 1 2 3 20 20 H 0.96996 * 119.99594 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2672 1.0556 0.0000 4 8 3.6239 0.6568 -0.0006 5 6 3.6691 -0.6929 -0.0015 6 6 4.8143 -1.4846 0.0028 7 1 4.7266 -2.5611 0.0066 8 6 6.0865 -0.8821 0.0022 9 7 6.1925 0.4175 -0.0019 10 14 7.6230 -1.9445 0.0074 11 1 7.6334 -2.8059 -1.2022 12 1 8.8264 -1.0744 0.0064 13 1 7.6308 -2.7978 1.2227 14 6 2.3328 -1.1468 -0.0009 15 6 1.8966 -2.5107 -0.0010 16 7 1.5505 -3.5927 0.0016 17 1 -0.3632 0.0000 1.0277 18 1 -0.3633 0.8900 -0.5138 19 1 -0.3633 -0.8900 -0.5139 20 1 7.0691 0.8325 -0.0027 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260996315.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:24 Heat of formation + Delta-G solvation = 20.231461 kcal Electronic energy + Delta-G solvation = -9763.841042 eV Core-core repulsion = 7733.581998 eV Total energy + Delta-G solvation = -2030.259045 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.048 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.63608 -37.10298 -36.25863 -34.58822 -31.96224 -29.15595 -28.20742 -23.44806 -21.65649 -19.44894 -18.67193 -17.15954 -16.27037 -15.85039 -15.01660 -14.19898 -14.09353 -13.94465 -13.92118 -13.58361 -13.29825 -13.10779 -13.09447 -12.59198 -11.95807 -11.57211 -11.54174 -10.90918 -9.78762 -9.13704 -7.26358 0.80488 1.29767 1.34601 1.53360 1.61559 1.99105 2.06652 2.55445 2.61825 3.09128 3.60229 4.13539 4.25673 4.69771 4.75528 4.91802 4.97730 4.97887 5.60756 5.82397 6.06337 6.19545 7.02290 7.08179 7.84143 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.053111 B = 0.015245 C = 0.011921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.074724 B = 1836.216907 C = 2348.145904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.162 3.838 3 N -0.432 5.432 4 O -0.113 6.113 5 C 0.231 3.769 6 C -0.405 4.405 7 H 0.119 0.881 8 C 0.026 3.974 9 N -0.755 5.755 10 Si 1.011 2.989 11 H -0.250 1.250 12 H -0.252 1.252 13 H -0.250 1.250 14 C -0.407 4.407 15 C 0.336 3.664 16 N -0.533 5.533 17 H 0.099 0.901 18 H 0.093 0.907 19 H 0.081 0.919 20 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 -0.618 0.063 1.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.008 4.008 3 N -0.192 5.192 4 O -0.113 6.113 5 C 0.170 3.830 6 C -0.432 4.432 7 H 0.137 0.863 8 C -0.201 4.201 9 N -0.377 5.377 10 Si 0.827 3.173 11 H -0.174 1.174 12 H -0.176 1.176 13 H -0.174 1.174 14 C -0.424 4.424 15 C 0.028 3.972 16 N -0.215 5.215 17 H 0.117 0.883 18 H 0.111 0.889 19 H 0.100 0.900 20 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.269 -0.663 0.066 1.434 hybrid contribution 0.637 -0.497 -0.007 0.807 sum 1.906 -1.160 0.059 2.232 Atomic orbital electron populations 1.20414 0.83934 1.04304 1.04612 1.23198 0.98486 0.89592 0.89541 1.79672 0.85576 1.19356 1.34589 1.89319 1.21933 1.18762 1.81275 1.20412 0.93288 0.83334 0.85923 1.19708 0.88857 0.95740 1.38931 0.86329 1.27544 1.05002 0.96961 0.90557 1.69599 1.30935 1.12800 1.24347 0.84793 0.73305 0.78093 0.81102 1.17374 1.17567 1.17382 1.16813 0.91431 0.86716 1.47391 1.24563 0.91595 0.91288 0.89750 1.81038 1.09945 1.11452 1.19099 0.88290 0.88857 0.89995 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.41 10.26 71.24 0.73 -1.68 14 2 C 0.16 7.34 7.23 43.58 0.32 7.66 14 3 N -0.43 -22.05 12.85 -46.82 -0.60 -22.65 14 4 O -0.11 -6.31 10.46 27.42 0.29 -6.02 14 5 C 0.23 12.29 6.92 23.22 0.16 12.45 14 6 C -0.40 -19.88 9.12 23.13 0.21 -19.66 14 7 H 0.12 5.51 7.74 -2.91 -0.02 5.49 14 8 C 0.03 1.14 5.51 85.52 0.47 1.61 14 9 N -0.75 -35.50 12.02 21.97 0.26 -35.23 14 10 Si 1.01 31.92 29.57 68.60 2.03 33.95 14 11 H -0.25 -7.69 7.11 99.48 0.71 -6.98 14 12 H -0.25 -7.25 7.11 99.48 0.71 -6.55 14 13 H -0.25 -7.69 7.11 99.48 0.71 -6.99 14 14 C -0.41 -20.12 6.06 -20.57 -0.12 -20.24 14 15 C 0.34 15.96 15.11 88.33 1.33 17.29 14 16 N -0.53 -25.24 18.54 19.00 0.35 -24.89 14 17 H 0.10 2.76 8.14 -2.39 -0.02 2.74 14 18 H 0.09 2.60 8.14 -2.39 -0.02 2.58 14 19 H 0.08 2.46 7.97 -2.38 -0.02 2.44 14 20 H 0.31 12.73 8.29 -92.71 -0.77 11.96 14 Total: -1.00 -59.42 205.24 6.70 -52.72 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.27 Total: 4.69 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 3.10 Total: -2.58 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: 0.01 Total: -82.77 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: 0.29 Total: -6.02 kcal Atomic # 14 Polarization: 31.92 SS G_CDS: 2.03 Total: 33.95 kcal Total: -59.42 6.70 -52.72 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260996315.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.953 kcal (2) G-P(sol) polarization free energy of solvation -59.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds