Wall clock time and date at job start Mon Mar 30 2020 01:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30503 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46884 * 269.99784 * 3 2 1 5 5 H 1.48497 * 109.46967 * 29.99449 * 3 2 1 6 6 H 1.48503 * 109.47272 * 149.99856 * 3 2 1 7 7 C 1.40467 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.40335 * 119.99726 * 0.02562 * 7 2 1 10 10 N 1.33321 * 126.77700 * 179.97438 * 9 7 2 11 11 C 1.33663 * 105.50872 * 179.97438 * 10 9 7 12 12 Cl 1.73605 * 126.09004 * 180.02562 * 11 10 9 13 13 N 1.30579 * 107.82076 * 0.02562 * 11 10 9 14 14 O 1.21283 * 110.65771 * 359.97438 * 13 11 10 15 15 H 0.96999 * 120.00389 * 0.02562 * 1 2 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.4866 2.0463 -1.4001 5 1 1.4364 2.6526 0.6999 6 1 3.5366 1.4402 0.7001 7 6 2.0074 -1.2165 0.0005 8 1 3.0874 -1.2164 0.0010 9 6 1.3057 -2.4318 0.0005 10 7 1.8314 -3.6570 0.0005 11 6 0.7887 -4.4933 0.0011 12 17 0.8687 -6.2275 0.0020 13 7 -0.3008 -3.7735 0.0009 14 8 -0.0323 -2.5908 0.0007 15 1 -0.4851 0.8400 -0.0004 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025979.mol2 15 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:03 Heat of formation + Delta-G solvation = 16.399537 kcal Electronic energy + Delta-G solvation = -8068.560904 eV Core-core repulsion = 6090.325802 eV Total energy + Delta-G solvation = -1978.235102 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 173.994 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -45.26150 -38.04971 -36.18904 -35.41711 -32.44951 -28.69611 -24.29228 -23.60376 -20.30952 -18.15429 -17.58412 -17.10338 -15.97840 -15.12098 -13.79970 -13.70365 -13.57636 -13.10280 -12.76627 -12.21455 -11.96232 -11.90066 -11.34445 -11.18484 -10.42627 -9.02107 -7.22278 0.44634 0.81576 1.42898 1.43888 1.65079 1.88410 2.16275 2.93246 3.11516 4.00125 4.80287 4.88943 5.65116 5.92325 6.07506 6.33966 7.95064 8.06543 Molecular weight = 173.99amu Principal moments of inertia in cm(-1) A = 0.149475 B = 0.012631 C = 0.011695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 187.277554 B = 2216.247139 C = 2393.683510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.027 3.973 3 Si 1.026 2.974 4 H -0.253 1.253 5 H -0.259 1.259 6 H -0.246 1.246 7 C -0.415 4.415 8 H 0.131 0.869 9 C 0.274 3.726 10 N -0.629 5.629 11 C 0.216 3.784 12 Cl 0.048 6.952 13 N -0.473 5.473 14 O 0.027 5.973 15 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 2.064 0.003 3.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.196 4.196 3 Si 0.842 3.158 4 H -0.177 1.177 5 H -0.182 1.182 6 H -0.169 1.169 7 C -0.451 4.451 8 H 0.148 0.852 9 C 0.089 3.911 10 N -0.377 5.377 11 C -0.083 4.083 12 Cl 0.075 6.925 13 N -0.210 5.210 14 O -0.018 6.018 15 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.908 1.422 0.007 2.380 hybrid contribution 0.032 0.122 -0.009 0.127 sum 1.940 1.545 -0.002 2.480 Atomic orbital electron populations 1.69662 1.09832 1.33536 1.28233 1.27477 0.95967 1.05919 0.90217 0.84537 0.78643 0.72236 0.80361 1.17671 1.18238 1.16947 1.19308 0.96188 0.85610 1.44038 0.85163 1.24670 0.79992 0.94484 0.91992 1.72245 1.27846 0.98588 1.39036 1.25878 0.87777 0.90922 1.03695 1.98295 1.98336 0.98705 1.97137 1.74424 1.23618 0.90988 1.32018 1.85546 1.26070 1.17180 1.73007 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.14 12.06 21.91 0.26 -37.88 13 2 C 0.03 1.24 5.50 85.43 0.47 1.71 13 3 Si 1.03 32.26 29.56 68.60 2.03 34.29 13 4 H -0.25 -7.57 7.11 99.48 0.71 -6.86 13 5 H -0.26 -7.59 7.11 99.48 0.71 -6.88 13 6 H -0.25 -7.40 7.11 99.48 0.71 -6.70 13 7 C -0.41 -21.09 9.48 23.32 0.22 -20.87 13 8 H 0.13 6.10 7.85 -2.91 -0.02 6.08 13 9 C 0.27 15.64 7.81 85.06 0.66 16.30 13 10 N -0.63 -35.32 11.61 -307.90 -3.58 -38.89 13 11 C 0.22 11.42 8.88 180.67 1.60 13.02 13 12 Cl 0.05 1.95 29.33 -2.72 -0.08 1.87 13 13 N -0.47 -26.68 12.16 -58.74 -0.71 -27.40 13 14 O 0.03 1.59 9.74 64.29 0.63 2.22 13 15 H 0.31 12.99 8.29 -92.71 -0.77 12.22 13 Total: -1.00 -60.60 173.60 2.84 -57.76 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: 1.33 Total: -2.14 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 2.96 Total: 10.17 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -4.03 Total: -104.17 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.63 Total: 2.22 kcal Atomic # 14 Polarization: 32.26 SS G_CDS: 2.03 Total: 34.29 kcal Atomic # 17 Polarization: 1.95 SS G_CDS: -0.08 Total: 1.87 kcal Total: -60.60 2.84 -57.76 kcal The number of atoms in the molecule is 15 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025979.mol2 15 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.158 kcal (2) G-P(sol) polarization free energy of solvation -60.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds