Wall clock time and date at job start Mon Mar 30 2020 01:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99554 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99735 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99728 * 3 2 1 7 7 C 1.38635 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00163 * 0.02562 * 7 2 1 9 9 O 1.34927 * 119.99870 * 180.02562 * 7 2 1 10 10 C 1.42904 * 116.99796 * 180.02562 * 9 7 2 11 11 H 1.09001 * 108.82926 * 29.30115 * 10 9 7 12 12 C 1.52341 * 108.86750 * 147.82971 * 10 9 7 13 13 C 1.54260 * 112.58443 * 120.81667 * 12 10 9 14 14 S 1.83954 * 102.58351 * 24.53087 * 13 12 10 15 15 C 1.54258 * 108.86860 * 270.76882 * 10 9 7 16 16 H 0.96997 * 119.99607 * 0.02562 * 1 2 3 17 17 H 1.08994 * 108.86559 * 241.63668 * 12 10 9 18 18 H 1.09004 * 108.86664 * 0.02562 * 12 10 9 19 19 H 1.09002 * 110.78514 * 142.80312 * 13 12 10 20 20 H 1.08997 * 110.78908 * 266.06571 * 13 12 10 21 21 H 1.09002 * 110.78589 * 332.92567 * 15 10 9 22 22 H 1.09000 * 110.78864 * 96.38175 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0465 1.4001 5 1 1.4474 2.6527 -0.7001 6 1 3.5475 1.4401 -0.7000 7 6 2.0090 -1.2006 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3582 -1.2006 0.0011 10 6 4.0070 -2.4739 0.0010 11 1 3.3652 -3.1957 -0.5043 12 6 5.3182 -2.3588 -0.7660 13 6 6.5434 -2.7245 0.0970 14 16 5.8165 -3.8258 1.3786 15 6 4.2154 -2.9276 1.4606 16 1 -0.4849 0.8401 -0.0004 17 1 5.2822 -3.0253 -1.6276 18 1 5.4303 -1.3341 -1.1205 19 1 7.2877 -3.2578 -0.4944 20 1 6.9776 -1.8331 0.5498 21 1 4.2875 -2.0677 2.1264 22 1 3.4145 -3.5964 1.7759 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038484.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:49 Heat of formation + Delta-G solvation = -61.223547 kcal Electronic energy + Delta-G solvation = -8503.428709 eV Core-core repulsion = 6763.244762 eV Total energy + Delta-G solvation = -1740.183947 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 174.046 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.27340 -35.41975 -33.80960 -30.21218 -27.04997 -25.34293 -21.39591 -19.98091 -18.05806 -17.28264 -16.23915 -15.93156 -15.35401 -14.64970 -14.33909 -14.11316 -13.61012 -12.90579 -12.85986 -12.50940 -12.41345 -11.82325 -11.73367 -11.36725 -10.98594 -10.38964 -8.79520 -8.28875 -6.00305 0.86831 1.27560 1.39545 1.41887 1.59515 2.42069 3.03233 3.26051 3.59615 3.91478 4.08635 4.23049 4.32077 4.65561 4.71170 4.81777 4.99342 5.14940 5.57840 6.10948 7.09944 7.73823 8.86768 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.078956 B = 0.013443 C = 0.012529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.544548 B = 2082.310313 C = 2234.238528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.013 4.013 3 Si 0.975 3.025 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.360 4.360 8 H 0.050 0.950 9 O -0.332 6.332 10 C 0.094 3.906 11 H 0.049 0.951 12 C -0.123 4.123 13 C -0.046 4.046 14 S -0.324 6.324 15 C -0.075 4.075 16 H 0.274 0.726 17 H 0.098 0.902 18 H 0.085 0.915 19 H 0.135 0.865 20 H 0.099 0.901 21 H 0.086 0.914 22 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.531 -3.127 -0.478 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.438 4.438 8 H 0.068 0.932 9 O -0.248 6.248 10 C 0.033 3.967 11 H 0.068 0.932 12 C -0.162 4.162 13 C -0.193 4.193 14 S -0.099 6.099 15 C -0.224 4.224 16 H 0.083 0.917 17 H 0.116 0.884 18 H 0.103 0.897 19 H 0.153 0.847 20 H 0.117 0.883 21 H 0.105 0.895 22 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.963 -3.854 0.103 13.525 hybrid contribution -0.955 1.235 -0.371 1.605 sum 12.008 -2.619 -0.268 12.293 Atomic orbital electron populations 1.69799 1.07025 1.28502 1.54598 1.25209 0.95750 1.02018 0.97635 0.85128 0.78697 0.77734 0.78556 1.19986 1.20721 1.18258 1.20397 0.79840 0.94196 1.49399 0.93185 1.85295 1.18705 1.27477 1.93371 1.22697 0.94879 0.86346 0.92749 0.93235 1.21986 0.90623 1.04531 0.99049 1.24197 0.99152 1.00316 0.95643 1.87660 1.19113 1.45175 1.57940 1.24672 0.95407 1.01419 1.00896 0.91673 0.88395 0.89668 0.84679 0.88267 0.89511 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.07 13.96 21.61 0.30 -58.76 14 2 C -0.01 -0.74 5.49 84.82 0.47 -0.28 14 3 Si 0.97 46.52 28.61 68.60 1.96 48.48 14 4 H -0.27 -12.70 7.11 99.48 0.71 -12.00 14 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 14 6 H -0.26 -11.92 7.11 99.48 0.71 -11.22 14 7 C -0.36 -20.93 10.21 67.91 0.69 -20.23 14 8 H 0.05 3.13 7.86 -2.91 -0.02 3.10 14 9 O -0.33 -16.68 7.98 -81.97 -0.65 -17.33 14 10 C 0.09 3.71 3.13 30.80 0.10 3.81 14 11 H 0.05 2.06 7.75 -2.39 -0.02 2.04 14 12 C -0.12 -3.69 6.13 30.80 0.19 -3.51 14 13 C -0.05 -1.11 7.46 72.41 0.54 -0.57 14 14 S -0.32 -9.90 23.26 -56.49 -1.31 -11.22 14 15 C -0.08 -2.76 7.07 72.41 0.51 -2.25 14 16 H 0.27 15.82 8.31 -92.71 -0.77 15.05 14 17 H 0.10 2.52 8.14 -2.39 -0.02 2.50 14 18 H 0.08 2.65 7.83 -2.39 -0.02 2.63 14 19 H 0.14 2.42 8.14 -2.39 -0.02 2.40 14 20 H 0.10 2.25 8.14 -2.39 -0.02 2.23 14 21 H 0.09 3.33 8.08 -2.39 -0.02 3.31 14 22 H 0.10 3.51 8.14 -2.39 -0.02 3.49 14 Total: -1.00 -64.51 207.04 3.99 -60.52 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 1.19 Total: 1.35 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 2.50 Total: -23.03 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.30 Total: -58.76 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.65 Total: -17.33 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.96 Total: 48.48 kcal Atomic # 16 Polarization: -9.90 SS G_CDS: -1.31 Total: -11.22 kcal Total: -64.51 3.99 -60.52 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038484.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.703 kcal (2) G-P(sol) polarization free energy of solvation -64.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds