Wall clock time and date at job start Mon Mar 30 2020 02:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.34478 * 126.93999 * 62.64056 * 3 2 1 5 5 N 1.36732 * 112.15824 * 180.22694 * 4 3 2 6 6 C 1.37153 * 123.94765 * 179.76440 * 5 4 3 7 7 H 1.07998 * 119.99957 * 156.41507 * 6 5 4 8 8 C 1.38920 * 119.99870 * 336.41510 * 6 5 4 9 9 N 1.31377 * 119.99849 * 160.47911 * 8 6 5 10 10 Si 1.86798 * 120.00262 * 340.47204 * 8 6 5 11 11 H 1.48497 * 109.46980 * 94.13301 * 10 8 6 12 12 H 1.48493 * 109.47506 * 214.13738 * 10 8 6 13 13 H 1.48510 * 109.46937 * 334.13820 * 10 8 6 14 14 C 1.34649 * 112.10622 * 359.59308 * 5 4 3 15 15 O 1.21241 * 126.96974 * 180.15777 * 14 5 4 16 16 C 1.51556 * 126.94087 * 242.63427 * 3 2 1 17 17 H 1.08006 * 123.91763 * 359.95269 * 4 3 2 18 18 H 0.96998 * 120.00051 * 179.97438 * 9 8 6 19 19 H 1.09001 * 110.60767 * 298.51744 * 16 3 2 20 20 H 1.09000 * 110.60548 * 61.32732 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3764 -0.4930 -0.9546 5 7 4.6984 -0.3365 -0.6425 6 6 5.7294 -0.7570 -1.4433 7 1 6.7020 -0.2953 -1.3583 8 6 5.5225 -1.7767 -2.3638 9 7 6.3488 -1.9272 -3.3741 10 14 4.0698 -2.9340 -2.1649 11 1 2.9249 -2.4336 -2.9674 12 1 4.4492 -4.2902 -2.6358 13 1 3.6803 -2.9981 -0.7333 14 6 4.8698 0.2819 0.5413 15 8 5.9234 0.5581 1.0738 16 6 3.4786 0.5579 1.0758 17 1 3.0224 -0.9627 -1.8605 18 1 6.2046 -2.6394 -4.0166 19 1 3.3193 1.6294 1.1960 20 1 3.3181 0.0390 2.0208 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111930.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:15 Heat of formation + Delta-G solvation = 28.127812 kcal Electronic energy + Delta-G solvation = -9881.287925 eV Core-core repulsion = 7851.371291 eV Total energy + Delta-G solvation = -2029.916633 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.048 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.73807 -36.56995 -35.75933 -33.53347 -31.36085 -27.59053 -25.40023 -22.59890 -19.80318 -17.85276 -17.43238 -15.75331 -15.35321 -14.61195 -14.15015 -13.40559 -13.09765 -12.81965 -12.72940 -12.33995 -12.05381 -11.62936 -11.55771 -10.80378 -10.57028 -10.20600 -9.47150 -9.09116 -7.69938 -6.89350 -4.47830 1.59465 2.77440 2.99115 3.00351 3.17374 3.30050 3.73130 3.94327 3.99931 4.45187 4.73977 5.21402 5.29987 5.68986 5.88176 6.25652 6.49148 7.00444 7.46961 7.91994 8.13707 8.23769 8.68438 9.02970 10.19741 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.038117 B = 0.020584 C = 0.014212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.405250 B = 1359.959797 C = 1969.705165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.308 3.692 3 C -0.261 4.261 4 C 0.159 3.841 5 N -0.379 5.379 6 C -0.352 4.352 7 H 0.128 0.872 8 C 0.070 3.930 9 N -0.834 5.834 10 Si 0.866 3.134 11 H -0.265 1.265 12 H -0.275 1.275 13 H -0.249 1.249 14 C 0.489 3.511 15 O -0.506 6.506 16 C -0.090 4.090 17 H 0.157 0.843 18 H 0.285 0.715 19 H 0.113 0.887 20 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 0.353 2.922 5.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.003 4.003 3 C -0.275 4.275 4 C 0.027 3.973 5 N -0.078 5.078 6 C -0.478 4.478 7 H 0.145 0.855 8 C -0.141 4.141 9 N -0.465 5.465 10 Si 0.691 3.309 11 H -0.191 1.191 12 H -0.200 1.200 13 H -0.173 1.173 14 C 0.281 3.719 15 O -0.383 6.383 16 C -0.131 4.131 17 H 0.174 0.826 18 H 0.096 0.904 19 H 0.131 0.869 20 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.260 0.380 2.998 6.066 hybrid contribution -0.171 -0.821 -0.270 0.881 sum -5.431 -0.441 2.728 6.094 Atomic orbital electron populations 1.81182 1.11831 1.13127 1.09508 1.24527 0.91192 0.91923 0.92683 1.16489 0.84927 1.22946 1.03144 1.21613 0.84349 0.93769 0.97604 1.41919 1.04431 1.44658 1.16808 1.19440 0.92645 1.20192 1.15476 0.85493 1.25274 0.97901 0.96858 0.94055 1.69679 1.36747 1.30574 1.09522 0.87060 0.81518 0.81581 0.80722 1.19147 1.20048 1.17258 1.20814 0.90692 0.79728 0.80627 1.90642 1.31886 1.53388 1.62417 1.20897 0.90881 1.02996 0.98280 0.82564 0.90389 0.86941 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.00 18.54 41.84 0.78 -8.22 14 2 C 0.31 5.44 15.88 -22.47 -0.36 5.08 14 3 C -0.26 -4.54 6.22 -103.61 -0.64 -5.18 14 4 C 0.16 3.10 8.04 -16.70 -0.13 2.97 14 5 N -0.38 -8.41 2.63 -61.22 -0.16 -8.57 14 6 C -0.35 -8.88 10.14 -14.92 -0.15 -9.03 14 7 H 0.13 3.53 8.06 -52.49 -0.42 3.10 14 8 C 0.07 1.73 5.43 -17.49 -0.09 1.63 14 9 N -0.83 -21.50 13.95 55.49 0.77 -20.72 14 10 Si 0.87 17.99 24.67 -169.99 -4.19 13.80 14 11 H -0.27 -5.17 6.64 56.52 0.38 -4.80 14 12 H -0.27 -5.70 7.11 56.52 0.40 -5.29 14 13 H -0.25 -5.10 6.79 56.52 0.38 -4.72 14 14 C 0.49 10.25 8.24 -10.61 -0.09 10.16 14 15 O -0.51 -12.05 17.79 5.59 0.10 -11.95 14 16 C -0.09 -1.44 6.91 -28.19 -0.19 -1.63 14 17 H 0.16 2.98 4.45 -52.48 -0.23 2.74 14 18 H 0.29 6.72 8.31 -40.82 -0.34 6.38 14 19 H 0.11 1.54 8.14 -51.93 -0.42 1.11 14 20 H 0.11 1.55 8.14 -51.93 -0.42 1.13 14 LS Contribution 196.08 15.07 2.95 2.95 Total: -1.00 -26.96 196.08 -2.09 -29.06 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -0.68 Total: -0.34 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.66 Total: 3.99 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 1.39 Total: -37.51 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.10 Total: -11.95 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -4.19 Total: 13.80 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -26.96 -2.09 -29.06 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111930.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.187 kcal (2) G-P(sol) polarization free energy of solvation -26.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds