Wall clock time and date at job start Mon Mar 30 2020 02:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.34478 * 126.93999 * 62.64056 * 3 2 1 5 5 N 1.36732 * 112.15824 * 180.22694 * 4 3 2 6 6 C 1.37153 * 123.94765 * 179.76440 * 5 4 3 7 7 H 1.07998 * 119.99957 * 156.41507 * 6 5 4 8 8 C 1.38920 * 119.99870 * 336.41510 * 6 5 4 9 9 N 1.31377 * 119.99849 * 160.47911 * 8 6 5 10 10 Si 1.86798 * 120.00262 * 340.47204 * 8 6 5 11 11 H 1.48497 * 109.46980 * 94.13301 * 10 8 6 12 12 H 1.48493 * 109.47506 * 214.13738 * 10 8 6 13 13 H 1.48510 * 109.46937 * 334.13820 * 10 8 6 14 14 C 1.34649 * 112.10622 * 359.59308 * 5 4 3 15 15 O 1.21241 * 126.96974 * 180.15777 * 14 5 4 16 16 C 1.51556 * 126.94087 * 242.63427 * 3 2 1 17 17 H 1.08006 * 123.91763 * 359.95269 * 4 3 2 18 18 H 0.96998 * 120.00051 * 179.97438 * 9 8 6 19 19 H 1.09001 * 110.60767 * 298.51744 * 16 3 2 20 20 H 1.09000 * 110.60548 * 61.32732 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3764 -0.4930 -0.9546 5 7 4.6984 -0.3365 -0.6425 6 6 5.7294 -0.7570 -1.4433 7 1 6.7020 -0.2953 -1.3583 8 6 5.5225 -1.7767 -2.3638 9 7 6.3488 -1.9272 -3.3741 10 14 4.0698 -2.9340 -2.1649 11 1 2.9249 -2.4336 -2.9674 12 1 4.4492 -4.2902 -2.6358 13 1 3.6803 -2.9981 -0.7333 14 6 4.8698 0.2819 0.5413 15 8 5.9234 0.5581 1.0738 16 6 3.4786 0.5579 1.0758 17 1 3.0224 -0.9627 -1.8605 18 1 6.2046 -2.6394 -4.0166 19 1 3.3193 1.6294 1.1960 20 1 3.3181 0.0390 2.0208 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111930.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:14 Heat of formation + Delta-G solvation = 10.248811 kcal Electronic energy + Delta-G solvation = -9882.063216 eV Core-core repulsion = 7851.371291 eV Total energy + Delta-G solvation = -2030.691925 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.048 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.33127 -38.21213 -37.31918 -35.28357 -33.02527 -29.12721 -27.15895 -24.14787 -21.45341 -19.54500 -19.09567 -17.37618 -16.93326 -16.24133 -15.81675 -15.03028 -14.66608 -14.49404 -14.27354 -13.86940 -13.48143 -13.19290 -13.18601 -12.47634 -12.20450 -11.84598 -11.16841 -10.79598 -9.30503 -8.73471 -6.39024 0.09542 1.14607 1.30301 1.40617 1.69919 1.70903 2.02336 2.37364 2.48987 2.89380 2.98758 3.70114 3.81968 4.31996 4.68212 4.78091 5.04799 5.27591 5.69426 6.18008 6.43847 6.66710 6.87181 7.34010 8.41056 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.038117 B = 0.020584 C = 0.014212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.405250 B = 1359.959797 C = 1969.705165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.324 3.676 3 C -0.209 4.209 4 C 0.141 3.859 5 N -0.397 5.397 6 C -0.373 4.373 7 H 0.079 0.921 8 C 0.031 3.969 9 N -0.882 5.882 10 Si 0.924 3.076 11 H -0.238 1.238 12 H -0.275 1.275 13 H -0.241 1.241 14 C 0.475 3.525 15 O -0.553 6.553 16 C -0.076 4.076 17 H 0.163 0.837 18 H 0.291 0.709 19 H 0.149 0.851 20 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 0.185 3.928 8.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C 0.012 3.988 3 C -0.222 4.222 4 C 0.012 3.988 5 N -0.099 5.099 6 C -0.500 4.500 7 H 0.097 0.903 8 C -0.176 4.176 9 N -0.515 5.515 10 Si 0.746 3.254 11 H -0.163 1.163 12 H -0.200 1.200 13 H -0.164 1.164 14 C 0.269 3.731 15 O -0.434 6.434 16 C -0.116 4.116 17 H 0.180 0.820 18 H 0.101 0.899 19 H 0.167 0.833 20 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.320 0.224 3.998 9.234 hybrid contribution 0.640 -0.659 -0.529 1.060 sum -7.680 -0.435 3.469 8.439 Atomic orbital electron populations 1.81241 1.12236 1.12748 1.09761 1.24254 0.90734 0.91601 0.92224 1.16554 0.84703 1.18952 1.02013 1.21740 0.83471 0.94998 0.98633 1.41902 1.04671 1.46005 1.17286 1.19048 0.92341 1.21326 1.17244 0.90326 1.25994 1.00875 0.97673 0.93080 1.69768 1.39352 1.31688 1.10713 0.86162 0.78883 0.79022 0.81339 1.16310 1.20048 1.16419 1.21643 0.92213 0.78984 0.80214 1.90611 1.33877 1.55446 1.63421 1.21021 0.86479 1.05517 0.98596 0.82011 0.89865 0.83319 0.83444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.85 18.54 19.00 0.35 -15.49 14 2 C 0.32 9.74 15.88 88.33 1.40 11.15 14 3 C -0.21 -6.30 6.22 -19.21 -0.12 -6.42 14 4 C 0.14 5.09 8.04 83.07 0.67 5.76 14 5 N -0.40 -17.45 2.63 -466.09 -1.23 -18.68 14 6 C -0.37 -19.63 10.14 84.02 0.85 -18.77 14 7 H 0.08 4.75 8.06 -2.91 -0.02 4.73 14 8 C 0.03 1.55 5.43 84.92 0.46 2.01 14 9 N -0.88 -47.09 13.95 21.65 0.30 -46.79 14 10 Si 0.92 36.09 24.67 68.60 1.69 37.78 14 11 H -0.24 -8.23 6.64 99.48 0.66 -7.57 14 12 H -0.27 -10.65 7.11 99.48 0.71 -9.95 14 13 H -0.24 -8.99 6.79 99.48 0.68 -8.32 14 14 C 0.48 19.47 8.24 87.95 0.72 20.19 14 15 O -0.55 -26.82 17.79 -2.91 -0.05 -26.87 14 16 C -0.08 -2.11 6.91 29.65 0.20 -1.90 14 17 H 0.16 5.63 4.45 -2.91 -0.01 5.62 14 18 H 0.29 14.08 8.31 -92.71 -0.77 13.31 14 19 H 0.15 3.23 8.14 -2.39 -0.02 3.21 14 20 H 0.15 3.24 8.14 -2.39 -0.02 3.22 14 Total: -1.00 -60.23 196.08 6.46 -53.77 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.20 Total: 4.26 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 4.19 Total: 12.02 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -0.57 Total: -80.96 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 1.69 Total: 37.78 kcal Total: -60.23 6.46 -53.77 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111930.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.022 kcal (2) G-P(sol) polarization free energy of solvation -60.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds