Wall clock time and date at job start Mon Mar 30 2020 02:27:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86794 * 119.99838 * 2 1
4 4 H 1.48498 * 109.47323 * 239.99687 * 3 2 1
5 5 H 1.48501 * 109.47373 * 359.97438 * 3 2 1
6 6 H 1.48504 * 109.47320 * 120.00089 * 3 2 1
7 7 C 1.37868 * 119.99984 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99928 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00290 * 0.02562 * 7 2 1
10 10 H 1.09008 * 110.52793 * 298.86482 * 9 7 2
11 11 C 1.54764 * 110.46457 * 176.28558 * 9 7 2
12 12 C 1.54386 * 101.66869 * 216.13584 * 11 9 7
13 13 N 1.47006 * 105.60508 * 25.73593 * 12 11 9
14 14 C 1.37200 * 141.60362 * 162.91658 * 13 12 11
15 15 C 1.34555 * 106.83800 * 179.81863 * 14 13 12
16 16 N 1.34001 * 108.03273 * 0.03144 * 15 14 13
17 17 C 1.30909 * 109.30441 * 0.06111 * 16 15 14
18 18 H 0.97001 * 120.00242 * 0.02562 * 1 2 3
19 19 H 1.09000 * 111.03730 * 98.03926 * 11 9 7
20 20 H 1.09002 * 110.99077 * 334.21213 * 11 9 7
21 21 H 1.09002 * 110.23593 * 266.67580 * 12 11 9
22 22 H 1.09004 * 110.23274 * 144.79176 * 12 11 9
23 23 H 1.08001 * 126.57744 * 359.79218 * 14 13 12
24 24 H 1.08006 * 125.98228 * 180.02562 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6177 0.0000
4 1 3.1029 1.6964 -1.2124
5 1 1.2841 2.7465 -0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0844 -1.1940 0.0010
9 6 1.2510 -2.4991 0.0005
10 1 0.6327 -2.5836 0.8943
11 6 2.2336 -3.6912 -0.0928
12 6 1.4412 -4.6808 -0.9739
13 7 0.5279 -3.8531 -1.7750
14 6 -0.2585 -3.8984 -2.8983
15 6 -0.8418 -2.6915 -3.0147
16 7 -0.4251 -1.9293 -1.9944
17 6 0.3987 -2.6194 -1.2470
18 1 -0.4850 0.8400 -0.0004
19 1 2.4285 -4.1156 0.8921
20 1 3.1630 -3.3940 -0.5787
21 1 0.8745 -5.3713 -0.3493
22 1 2.1195 -5.2322 -1.6250
23 1 -0.3848 -4.7410 -3.5620
24 1 -1.5259 -2.3898 -3.7942
RHF calculation, no. of doubly occupied orbitals= 32
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261118669.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:27:00
Heat of formation + Delta-G solvation = 74.713564 kcal
Electronic energy + Delta-G solvation = -10465.712459 eV
Core-core repulsion = 8573.649030 eV
Total energy + Delta-G solvation = -1892.063429 eV
No. of doubly occupied orbitals = 32
Molecular weight
(most abundant/longest-lived isotopes) = 178.080 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-41.14976 -35.44989 -32.74377 -30.18102 -27.47187 -26.88817 -23.68347 -20.95733
-19.80568 -18.74355 -16.31605 -15.82992 -14.80899 -14.31855 -13.42354 -12.78497
-12.68204 -12.29249 -11.99549 -11.71964 -11.20634 -10.78671 -10.53322 -10.27492
-9.58382 -9.28202 -8.44080 -8.37843 -8.29734 -7.10877 -5.86307 -3.98382
3.17150 3.40312 3.45766 3.46658 3.76569 4.47837 4.59331 5.14470
5.41343 5.47892 5.64149 5.67583 5.88235 6.17980 6.39632 6.51370
6.75956 6.78588 7.39581 7.52912 7.94356 8.00756 8.17288 8.41196
8.99830 9.61381 9.67444 11.18780
Molecular weight = 178.08amu
Principal moments of inertia in cm(-1)
A = 0.054026 B = 0.017277 C = 0.014141
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 518.147028 B = 1620.248382 C = 1979.646405
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.834 5.834
2 C 0.076 3.924
3 Si 0.891 3.109
4 H -0.279 1.279
5 H -0.287 1.287
6 H -0.278 1.278
7 C -0.541 4.541
8 H 0.060 0.940
9 C 0.116 3.884
10 H 0.053 0.947
11 C -0.126 4.126
12 C 0.109 3.891
13 N -0.508 5.508
14 C -0.090 4.090
15 C -0.039 4.039
16 N -0.454 5.454
17 C 0.267 3.733
18 H 0.262 0.738
19 H 0.080 0.920
20 H 0.076 0.924
21 H 0.071 0.929
22 H 0.069 0.931
23 H 0.151 0.849
24 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.129 -7.462 -1.541 7.912
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.467 5.467
2 C -0.132 4.132
3 Si 0.719 3.281
4 H -0.204 1.204
5 H -0.213 1.213
6 H -0.204 1.204
7 C -0.579 4.579
8 H 0.078 0.922
9 C 0.095 3.905
10 H 0.071 0.929
11 C -0.164 4.164
12 C -0.014 4.014
13 N -0.194 5.194
14 C -0.221 4.221
15 C -0.189 4.189
16 N -0.170 5.170
17 C 0.004 3.996
18 H 0.072 0.928
19 H 0.099 0.901
20 H 0.095 0.905
21 H 0.090 0.910
22 H 0.088 0.912
23 H 0.168 0.832
24 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 1.731 -6.761 -1.473 7.133
hybrid contribution 0.530 -0.072 -0.551 0.768
sum 2.261 -6.833 -2.024 7.477
Atomic orbital electron populations
1.69996 1.05557 1.26660 1.44443 1.24977 0.94781 0.98994 0.94464
0.86697 0.79614 0.83475 0.78342 1.20427 1.21282 1.20354 1.20683
0.92408 0.89197 1.55644 0.92173 1.18045 0.90152 0.93704 0.88551
0.92891 1.22857 0.99299 0.95690 0.98574 1.22210 0.91577 0.94121
0.93469 1.46853 1.35861 1.15608 1.21052 1.21916 1.04072 1.01763
0.94310 1.22349 1.04734 0.91162 1.00672 1.70234 1.12745 1.30360
1.03668 1.25635 0.96258 0.79732 0.97998 0.92786 0.90130 0.90519
0.91034 0.91215 0.83202 0.82821
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -24.93 11.67 55.43 0.65 -24.29 14
2 C 0.08 2.17 5.32 -17.82 -0.09 2.07 14
3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 14
4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 14
5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 14
6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14
7 C -0.54 -14.95 8.54 -34.44 -0.29 -15.24 14
8 H 0.06 1.60 7.64 -52.49 -0.40 1.20 14
9 C 0.12 2.91 2.88 -91.57 -0.26 2.65 14
10 H 0.05 1.40 8.14 -51.92 -0.42 0.98 14
11 C -0.13 -2.38 6.68 -25.08 -0.17 -2.54 14
12 C 0.11 1.88 7.77 -3.04 -0.02 1.85 14
13 N -0.51 -11.16 3.61 -112.28 -0.41 -11.56 14
14 C -0.09 -1.85 12.04 -16.45 -0.20 -2.05 14
15 C -0.04 -0.90 11.86 -17.91 -0.21 -1.11 14
16 N -0.45 -12.57 10.20 -10.56 -0.11 -12.68 14
17 C 0.27 7.02 7.16 -154.86 -1.11 5.91 14
18 H 0.26 7.57 8.31 -40.82 -0.34 7.23 14
19 H 0.08 1.27 8.14 -51.93 -0.42 0.85 14
20 H 0.08 1.44 7.80 -51.93 -0.41 1.04 14
21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 14
22 H 0.07 1.02 8.14 -51.93 -0.42 0.60 14
23 H 0.15 2.43 8.06 -52.49 -0.42 2.01 14
24 H 0.15 2.97 8.06 -52.48 -0.42 2.55 14
LS Contribution 211.03 15.07 3.18 3.18
Total: -1.00 -32.61 211.03 -6.55 -39.16
By element:
Atomic # 1 Polarization: 0.35 SS G_CDS: -2.48 Total: -2.13 kcal
Atomic # 6 Polarization: -6.10 SS G_CDS: -2.36 Total: -8.47 kcal
Atomic # 7 Polarization: -48.66 SS G_CDS: 0.13 Total: -48.52 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal
Total LS contribution 3.18 Total: 3.18 kcal
Total: -32.61 -6.55 -39.16 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261118669.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.870 kcal
(2) G-P(sol) polarization free energy of solvation -32.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds