Wall clock time and date at job start Mon Mar 30 2020 02:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47323 * 239.99687 * 3 2 1 5 5 H 1.48501 * 109.47373 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47320 * 120.00089 * 3 2 1 7 7 C 1.37868 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00290 * 0.02562 * 7 2 1 10 10 H 1.09008 * 110.52793 * 298.86482 * 9 7 2 11 11 C 1.54764 * 110.46457 * 176.28558 * 9 7 2 12 12 C 1.54386 * 101.66869 * 216.13584 * 11 9 7 13 13 N 1.47006 * 105.60508 * 25.73593 * 12 11 9 14 14 C 1.37200 * 141.60362 * 162.91658 * 13 12 11 15 15 C 1.34555 * 106.83800 * 179.81863 * 14 13 12 16 16 N 1.34001 * 108.03273 * 0.03144 * 15 14 13 17 17 C 1.30909 * 109.30441 * 0.06111 * 16 15 14 18 18 H 0.97001 * 120.00242 * 0.02562 * 1 2 3 19 19 H 1.09000 * 111.03730 * 98.03926 * 11 9 7 20 20 H 1.09002 * 110.99077 * 334.21213 * 11 9 7 21 21 H 1.09002 * 110.23593 * 266.67580 * 12 11 9 22 22 H 1.09004 * 110.23274 * 144.79176 * 12 11 9 23 23 H 1.08001 * 126.57744 * 359.79218 * 14 13 12 24 24 H 1.08006 * 125.98228 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6327 -2.5836 0.8943 11 6 2.2336 -3.6912 -0.0928 12 6 1.4412 -4.6808 -0.9739 13 7 0.5279 -3.8531 -1.7750 14 6 -0.2585 -3.8984 -2.8983 15 6 -0.8418 -2.6915 -3.0147 16 7 -0.4251 -1.9293 -1.9944 17 6 0.3987 -2.6194 -1.2470 18 1 -0.4850 0.8400 -0.0004 19 1 2.4285 -4.1156 0.8921 20 1 3.1630 -3.3940 -0.5787 21 1 0.8745 -5.3713 -0.3493 22 1 2.1195 -5.2322 -1.6250 23 1 -0.3848 -4.7410 -3.5620 24 1 -1.5259 -2.3898 -3.7942 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118669.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:00 Heat of formation + Delta-G solvation = 53.345058 kcal Electronic energy + Delta-G solvation = -10466.639067 eV Core-core repulsion = 8573.649030 eV Total energy + Delta-G solvation = -1892.990037 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.86252 -37.13096 -34.73983 -32.04243 -29.10429 -28.71561 -25.59634 -22.60175 -21.45186 -20.59467 -18.30954 -17.41708 -16.61626 -16.16049 -15.08628 -14.45289 -14.44078 -14.07979 -13.77723 -13.41788 -12.86333 -12.67586 -12.42875 -11.92668 -11.51855 -11.18662 -10.47353 -10.16928 -10.15145 -8.85289 -7.98994 -6.16070 1.42888 1.46320 1.49991 1.53448 2.24698 2.47997 2.71612 3.30381 3.64997 4.12688 4.14656 4.20825 4.42374 4.66367 4.86251 4.94638 5.05870 5.24112 5.54594 5.74870 5.81655 6.20242 6.36527 6.56573 6.94106 7.52368 7.84729 9.05053 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.054026 B = 0.017277 C = 0.014141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.147028 B = 1620.248382 C = 1979.646405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.100 3.900 10 H 0.024 0.976 11 C -0.114 4.114 12 C 0.106 3.894 13 N -0.505 5.505 14 C -0.061 4.061 15 C -0.077 4.077 16 N -0.510 5.510 17 C 0.223 3.777 18 H 0.255 0.745 19 H 0.112 0.888 20 H 0.076 0.924 21 H 0.099 0.901 22 H 0.108 0.892 23 H 0.202 0.798 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -9.277 -2.150 10.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.591 4.591 8 H 0.082 0.918 9 C 0.080 3.920 10 H 0.042 0.958 11 C -0.152 4.152 12 C -0.014 4.014 13 N -0.190 5.190 14 C -0.192 4.192 15 C -0.225 4.225 16 N -0.228 5.228 17 C -0.041 4.041 18 H 0.064 0.936 19 H 0.130 0.870 20 H 0.094 0.906 21 H 0.117 0.883 22 H 0.126 0.874 23 H 0.219 0.781 24 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.954 -8.603 -2.063 9.327 hybrid contribution 0.140 0.416 -0.391 0.588 sum 3.094 -8.187 -2.454 9.090 Atomic orbital electron populations 1.70175 1.07079 1.26727 1.46379 1.25784 0.95508 1.02468 0.94450 0.85730 0.78346 0.79460 0.78696 1.20500 1.21594 1.18629 1.21147 0.92846 0.90714 1.54441 0.91772 1.18082 0.91058 0.95371 0.87532 0.95832 1.22795 0.97809 0.93630 1.00943 1.22538 0.91616 0.93457 0.93775 1.47138 1.35828 1.14970 1.21030 1.22620 1.01205 1.02077 0.93326 1.22873 1.06505 0.92207 1.00937 1.70053 1.14043 1.33089 1.05575 1.25493 0.97810 0.81804 0.99026 0.93581 0.86971 0.90563 0.88257 0.87389 0.78100 0.80644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.88 11.67 21.44 0.25 -53.63 14 2 C 0.02 1.29 5.32 84.65 0.45 1.74 14 3 Si 0.95 45.52 29.54 68.60 2.03 47.55 14 4 H -0.28 -13.26 7.11 99.48 0.71 -12.55 14 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 14 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 14 7 C -0.55 -30.89 8.54 25.60 0.22 -30.67 14 8 H 0.06 3.40 7.64 -2.91 -0.02 3.38 14 9 C 0.10 5.05 2.88 -11.41 -0.03 5.02 14 10 H 0.02 1.30 8.14 -2.38 -0.02 1.28 14 11 C -0.11 -4.01 6.68 31.67 0.21 -3.80 14 12 C 0.11 3.25 7.77 86.75 0.67 3.92 14 13 N -0.50 -20.89 3.61 -509.15 -1.84 -22.73 14 14 C -0.06 -2.31 12.04 83.01 1.00 -1.31 14 15 C -0.08 -3.46 11.86 83.52 0.99 -2.47 14 16 N -0.51 -28.71 10.20 -187.34 -1.91 -30.62 14 17 C 0.22 11.72 7.16 138.35 0.99 12.71 14 18 H 0.26 15.37 8.31 -92.71 -0.77 14.59 14 19 H 0.11 3.18 8.14 -2.39 -0.02 3.16 14 20 H 0.08 2.68 7.80 -2.39 -0.02 2.66 14 21 H 0.10 2.53 8.14 -2.39 -0.02 2.51 14 22 H 0.11 2.54 8.14 -2.39 -0.02 2.52 14 23 H 0.20 5.41 8.06 -2.91 -0.02 5.38 14 24 H 0.18 6.65 8.06 -2.91 -0.02 6.63 14 Total: -1.00 -73.08 211.03 4.22 -68.86 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.18 Total: 5.42 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 4.50 Total: -14.85 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.50 Total: -106.98 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -73.08 4.22 -68.86 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118669.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.209 kcal (2) G-P(sol) polarization free energy of solvation -73.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds