Wall clock time and date at job start Mon Mar 30 2020 02:27:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86794 * 119.99838 * 2 1
4 4 H 1.48498 * 109.47323 * 239.99687 * 3 2 1
5 5 H 1.48501 * 109.47373 * 359.97438 * 3 2 1
6 6 H 1.48504 * 109.47320 * 120.00089 * 3 2 1
7 7 C 1.37868 * 119.99984 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99928 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00290 * 0.02562 * 7 2 1
10 10 H 1.09008 * 110.52793 * 298.86482 * 9 7 2
11 11 C 1.54764 * 110.46457 * 176.28558 * 9 7 2
12 12 C 1.54386 * 101.66869 * 216.13584 * 11 9 7
13 13 N 1.47006 * 105.60508 * 25.73593 * 12 11 9
14 14 C 1.37200 * 141.60362 * 162.91658 * 13 12 11
15 15 C 1.34555 * 106.83800 * 179.81863 * 14 13 12
16 16 N 1.34001 * 108.03273 * 0.03144 * 15 14 13
17 17 C 1.30909 * 109.30441 * 0.06111 * 16 15 14
18 18 H 0.97001 * 120.00242 * 0.02562 * 1 2 3
19 19 H 1.09000 * 111.03730 * 98.03926 * 11 9 7
20 20 H 1.09002 * 110.99077 * 334.21213 * 11 9 7
21 21 H 1.09002 * 110.23593 * 266.67580 * 12 11 9
22 22 H 1.09004 * 110.23274 * 144.79176 * 12 11 9
23 23 H 1.08001 * 126.57744 * 359.79218 * 14 13 12
24 24 H 1.08006 * 125.98228 * 180.02562 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6177 0.0000
4 1 3.1029 1.6964 -1.2124
5 1 1.2841 2.7465 -0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0844 -1.1940 0.0010
9 6 1.2510 -2.4991 0.0005
10 1 0.6327 -2.5836 0.8943
11 6 2.2336 -3.6912 -0.0928
12 6 1.4412 -4.6808 -0.9739
13 7 0.5279 -3.8531 -1.7750
14 6 -0.2585 -3.8984 -2.8983
15 6 -0.8418 -2.6915 -3.0147
16 7 -0.4251 -1.9293 -1.9944
17 6 0.3987 -2.6194 -1.2470
18 1 -0.4850 0.8400 -0.0004
19 1 2.4285 -4.1156 0.8921
20 1 3.1630 -3.3940 -0.5787
21 1 0.8745 -5.3713 -0.3493
22 1 2.1195 -5.2322 -1.6250
23 1 -0.3848 -4.7410 -3.5620
24 1 -1.5259 -2.3898 -3.7942
RHF calculation, no. of doubly occupied orbitals= 32
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261118669.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:27:00
Heat of formation + Delta-G solvation = 53.345058 kcal
Electronic energy + Delta-G solvation = -10466.639067 eV
Core-core repulsion = 8573.649030 eV
Total energy + Delta-G solvation = -1892.990037 eV
No. of doubly occupied orbitals = 32
Molecular weight
(most abundant/longest-lived isotopes) = 178.080 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-42.86252 -37.13096 -34.73983 -32.04243 -29.10429 -28.71561 -25.59634 -22.60175
-21.45186 -20.59467 -18.30954 -17.41708 -16.61626 -16.16049 -15.08628 -14.45289
-14.44078 -14.07979 -13.77723 -13.41788 -12.86333 -12.67586 -12.42875 -11.92668
-11.51855 -11.18662 -10.47353 -10.16928 -10.15145 -8.85289 -7.98994 -6.16070
1.42888 1.46320 1.49991 1.53448 2.24698 2.47997 2.71612 3.30381
3.64997 4.12688 4.14656 4.20825 4.42374 4.66367 4.86251 4.94638
5.05870 5.24112 5.54594 5.74870 5.81655 6.20242 6.36527 6.56573
6.94106 7.52368 7.84729 9.05053
Molecular weight = 178.08amu
Principal moments of inertia in cm(-1)
A = 0.054026 B = 0.017277 C = 0.014141
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 518.147028 B = 1620.248382 C = 1979.646405
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.870 5.870
2 C 0.022 3.978
3 Si 0.952 3.048
4 H -0.279 1.279
5 H -0.290 1.290
6 H -0.262 1.262
7 C -0.553 4.553
8 H 0.064 0.936
9 C 0.100 3.900
10 H 0.024 0.976
11 C -0.114 4.114
12 C 0.106 3.894
13 N -0.505 5.505
14 C -0.061 4.061
15 C -0.077 4.077
16 N -0.510 5.510
17 C 0.223 3.777
18 H 0.255 0.745
19 H 0.112 0.888
20 H 0.076 0.924
21 H 0.099 0.901
22 H 0.108 0.892
23 H 0.202 0.798
24 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.319 -9.277 -2.150 10.085
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.504 5.504
2 C -0.182 4.182
3 Si 0.778 3.222
4 H -0.205 1.205
5 H -0.216 1.216
6 H -0.186 1.186
7 C -0.591 4.591
8 H 0.082 0.918
9 C 0.080 3.920
10 H 0.042 0.958
11 C -0.152 4.152
12 C -0.014 4.014
13 N -0.190 5.190
14 C -0.192 4.192
15 C -0.225 4.225
16 N -0.228 5.228
17 C -0.041 4.041
18 H 0.064 0.936
19 H 0.130 0.870
20 H 0.094 0.906
21 H 0.117 0.883
22 H 0.126 0.874
23 H 0.219 0.781
24 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges 2.954 -8.603 -2.063 9.327
hybrid contribution 0.140 0.416 -0.391 0.588
sum 3.094 -8.187 -2.454 9.090
Atomic orbital electron populations
1.70175 1.07079 1.26727 1.46379 1.25784 0.95508 1.02468 0.94450
0.85730 0.78346 0.79460 0.78696 1.20500 1.21594 1.18629 1.21147
0.92846 0.90714 1.54441 0.91772 1.18082 0.91058 0.95371 0.87532
0.95832 1.22795 0.97809 0.93630 1.00943 1.22538 0.91616 0.93457
0.93775 1.47138 1.35828 1.14970 1.21030 1.22620 1.01205 1.02077
0.93326 1.22873 1.06505 0.92207 1.00937 1.70053 1.14043 1.33089
1.05575 1.25493 0.97810 0.81804 0.99026 0.93581 0.86971 0.90563
0.88257 0.87389 0.78100 0.80644
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -53.88 11.67 21.44 0.25 -53.63 14
2 C 0.02 1.29 5.32 84.65 0.45 1.74 14
3 Si 0.95 45.52 29.54 68.60 2.03 47.55 14
4 H -0.28 -13.26 7.11 99.48 0.71 -12.55 14
5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 14
6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 14
7 C -0.55 -30.89 8.54 25.60 0.22 -30.67 14
8 H 0.06 3.40 7.64 -2.91 -0.02 3.38 14
9 C 0.10 5.05 2.88 -11.41 -0.03 5.02 14
10 H 0.02 1.30 8.14 -2.38 -0.02 1.28 14
11 C -0.11 -4.01 6.68 31.67 0.21 -3.80 14
12 C 0.11 3.25 7.77 86.75 0.67 3.92 14
13 N -0.50 -20.89 3.61 -509.15 -1.84 -22.73 14
14 C -0.06 -2.31 12.04 83.01 1.00 -1.31 14
15 C -0.08 -3.46 11.86 83.52 0.99 -2.47 14
16 N -0.51 -28.71 10.20 -187.34 -1.91 -30.62 14
17 C 0.22 11.72 7.16 138.35 0.99 12.71 14
18 H 0.26 15.37 8.31 -92.71 -0.77 14.59 14
19 H 0.11 3.18 8.14 -2.39 -0.02 3.16 14
20 H 0.08 2.68 7.80 -2.39 -0.02 2.66 14
21 H 0.10 2.53 8.14 -2.39 -0.02 2.51 14
22 H 0.11 2.54 8.14 -2.39 -0.02 2.52 14
23 H 0.20 5.41 8.06 -2.91 -0.02 5.38 14
24 H 0.18 6.65 8.06 -2.91 -0.02 6.63 14
Total: -1.00 -73.08 211.03 4.22 -68.86
By element:
Atomic # 1 Polarization: 4.24 SS G_CDS: 1.18 Total: 5.42 kcal
Atomic # 6 Polarization: -19.36 SS G_CDS: 4.50 Total: -14.85 kcal
Atomic # 7 Polarization: -103.48 SS G_CDS: -3.50 Total: -106.98 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal
Total: -73.08 4.22 -68.86 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261118669.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.209 kcal
(2) G-P(sol) polarization free energy of solvation -73.081 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds