Wall clock time and date at job start Mon Mar 30 2020 01:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00047 * 2 1 4 4 H 1.48504 * 109.47373 * 85.10580 * 3 2 1 5 5 H 1.48503 * 109.47273 * 325.10587 * 3 2 1 6 6 H 1.48501 * 109.47619 * 205.10353 * 3 2 1 7 7 C 1.37877 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00339 * 172.91391 * 7 2 1 9 9 C 1.50697 * 119.99902 * 352.91823 * 7 2 1 10 10 F 1.39895 * 109.52511 * 56.64655 * 9 7 2 11 11 C 1.53178 * 109.52317 * 176.83681 * 9 7 2 12 12 C 1.53178 * 109.03994 * 176.88188 * 11 9 7 13 13 C 1.53096 * 109.16394 * 303.02429 * 12 11 9 14 14 O 1.42904 * 109.41656 * 57.60327 * 13 12 11 15 15 C 1.42908 * 114.09710 * 298.84283 * 14 13 12 16 16 H 0.96994 * 120.00385 * 359.97438 * 1 2 3 17 17 H 1.08991 * 109.54588 * 296.75202 * 11 9 7 18 18 H 1.09001 * 109.54645 * 57.02156 * 11 9 7 19 19 H 1.08991 * 109.52632 * 183.11298 * 12 11 9 20 20 H 1.09008 * 109.57032 * 62.95586 * 12 11 9 21 21 H 1.09006 * 109.47636 * 297.62335 * 13 12 11 22 22 H 1.08996 * 109.48086 * 177.58942 * 13 12 11 23 23 H 1.09000 * 109.48013 * 301.17424 * 15 14 13 24 24 H 1.08994 * 109.48966 * 181.14417 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3932 2.1062 1.3950 5 1 1.5021 2.6206 -0.8009 6 1 3.5946 1.4126 -0.5940 7 6 2.0045 -1.1940 0.0005 8 1 3.0783 -1.1977 -0.1148 9 6 1.2597 -2.4941 0.1620 10 9 0.2856 -2.6020 -0.8363 11 6 2.2418 -3.6641 0.0493 12 6 1.4875 -4.9749 0.2924 13 6 0.8077 -4.9169 1.6629 14 8 -0.0683 -3.7889 1.7113 15 6 0.5889 -2.5318 1.5377 16 1 -0.4850 0.8400 0.0004 17 1 2.6817 -3.6762 -0.9478 18 1 3.0289 -3.5528 0.7951 19 1 2.1890 -5.8087 0.2687 20 1 0.7332 -5.1113 -0.4827 21 1 1.5655 -4.8222 2.4408 22 1 0.2342 -5.8297 1.8232 23 1 1.3437 -2.4060 2.3138 24 1 -0.1423 -1.7265 1.6077 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166184.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:41 Heat of formation + Delta-G solvation = -109.500172 kcal Electronic energy + Delta-G solvation = -10859.200005 eV Core-core repulsion = 8686.542545 eV Total energy + Delta-G solvation = -2172.657460 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 174.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.51326 -37.80300 -33.25024 -32.21879 -29.58465 -25.28549 -24.07089 -21.88868 -18.99580 -16.85008 -15.37534 -15.19949 -14.61099 -14.16789 -13.79399 -13.32418 -12.62520 -11.99036 -11.85302 -11.20675 -11.07574 -10.92213 -10.77675 -10.39117 -10.21244 -10.06460 -9.37371 -8.89516 -8.60148 -8.16338 -6.14639 -4.32586 3.23194 3.30619 3.33903 4.29874 4.79808 5.14892 5.53254 5.61890 5.71288 5.99561 6.15301 6.21682 6.44162 6.50495 6.55619 6.74479 6.92353 7.41606 7.68276 7.78400 7.86357 8.32793 8.70765 9.40352 10.89249 Molecular weight = 174.08amu Principal moments of inertia in cm(-1) A = 0.076253 B = 0.016401 C = 0.015746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.111058 B = 1706.773074 C = 1777.845408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.076 3.924 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.563 4.563 8 H 0.068 0.932 9 C 0.217 3.783 10 F -0.220 7.220 11 C -0.136 4.136 12 C -0.157 4.157 13 C 0.062 3.938 14 O -0.393 6.393 15 C 0.049 3.951 16 H 0.266 0.734 17 H 0.062 0.938 18 H 0.064 0.936 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.039 0.961 22 H 0.079 0.921 23 H 0.041 0.959 24 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 -5.113 2.542 6.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.601 4.601 8 H 0.086 0.914 9 C 0.198 3.802 10 F -0.201 7.201 11 C -0.174 4.174 12 C -0.194 4.194 13 C -0.015 4.015 14 O -0.312 6.312 15 C -0.027 4.027 16 H 0.076 0.924 17 H 0.081 0.919 18 H 0.082 0.918 19 H 0.078 0.922 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.097 0.903 23 H 0.060 0.940 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.599 -5.008 2.539 6.187 hybrid contribution 0.761 0.936 -0.137 1.214 sum 3.360 -4.072 2.402 5.800 Atomic orbital electron populations 1.70035 1.05980 1.27161 1.46771 1.25105 0.94901 0.99661 0.93340 0.86467 0.79974 0.82744 0.78183 1.20330 1.20929 1.19616 1.21381 0.94200 0.90016 1.54477 0.91413 1.18883 0.83697 0.93534 0.84089 1.92737 1.66220 1.97140 1.64002 1.22158 0.98819 0.94589 1.01819 1.22195 1.00115 0.98268 0.98858 1.22420 0.93484 0.89987 0.95608 1.87889 1.35086 1.14972 1.93223 1.23422 0.98211 0.84298 0.96811 0.92431 0.91929 0.91765 0.92247 0.91224 0.94246 0.90284 0.94041 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.08 11.32 55.43 0.63 -24.45 14 2 C 0.08 2.11 5.22 -17.82 -0.09 2.02 14 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 14 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 14 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 14 7 C -0.56 -15.60 8.28 -34.44 -0.29 -15.88 14 8 H 0.07 1.81 7.76 -52.49 -0.41 1.41 14 9 C 0.22 5.67 0.81 -91.63 -0.07 5.59 14 10 F -0.22 -6.46 15.63 2.25 0.04 -6.42 14 11 C -0.14 -2.94 5.04 -26.55 -0.13 -3.07 14 12 C -0.16 -2.91 6.01 -26.59 -0.16 -3.07 14 13 C 0.06 1.15 6.84 37.21 0.25 1.40 14 14 O -0.39 -9.11 10.74 -35.23 -0.38 -9.49 14 15 C 0.05 1.22 5.66 37.21 0.21 1.43 14 16 H 0.27 7.24 8.31 -40.82 -0.34 6.90 14 17 H 0.06 1.33 8.14 -51.93 -0.42 0.91 14 18 H 0.06 1.29 8.14 -51.93 -0.42 0.87 14 19 H 0.06 0.90 8.14 -51.93 -0.42 0.48 14 20 H 0.07 1.38 7.95 -51.92 -0.41 0.96 14 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 14 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 14 23 H 0.04 0.96 8.14 -51.93 -0.42 0.54 14 24 H 0.12 3.17 6.71 -51.93 -0.35 2.83 14 LS Contribution 205.98 15.07 3.10 3.10 Total: -1.00 -30.14 205.98 -4.75 -34.89 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -2.84 Total: -1.95 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.28 Total: -11.58 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.38 Total: -9.49 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.04 Total: -6.42 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -30.14 -4.75 -34.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166184.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.610 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds