Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99842 * 2 1 4 4 H 1.48511 * 109.46853 * 240.00357 * 3 2 1 5 5 H 1.48496 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47265 * 120.00475 * 3 2 1 7 7 C 1.37879 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00225 * 359.97438 * 7 2 1 10 10 F 1.39908 * 109.60118 * 59.67815 * 9 7 2 11 11 C 1.52934 * 109.60492 * 180.02562 * 9 7 2 12 12 C 1.53707 * 112.49291 * 150.03372 * 11 9 7 13 13 S 1.83400 * 104.96782 * 357.17229 * 12 11 9 14 14 C 1.55159 * 109.60417 * 299.54245 * 9 7 2 15 15 H 0.96999 * 120.00189 * 359.97438 * 1 2 3 16 16 H 1.08996 * 108.88892 * 29.23496 * 11 9 7 17 17 H 1.08999 * 108.77383 * 270.74703 * 11 9 7 18 18 H 1.08999 * 110.34351 * 238.30429 * 12 11 9 19 19 H 1.08996 * 110.43289 * 116.09271 * 12 11 9 20 20 H 1.08994 * 111.13431 * 80.71732 * 14 9 7 21 21 H 1.08994 * 111.12916 * 316.53876 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2127 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 9 0.4397 -2.5727 -1.1379 11 6 2.2422 -3.6638 -0.0005 12 6 1.6863 -4.9090 0.7088 13 16 0.0420 -4.3994 1.3413 14 6 0.3671 -2.5899 1.2714 15 1 -0.4850 0.8400 0.0004 16 1 3.1562 -3.3494 0.5031 17 1 2.4798 -3.9223 -1.0324 18 1 2.3371 -5.1970 1.5344 19 1 1.5822 -5.7338 0.0039 20 1 -0.5591 -2.0291 1.1471 21 1 0.9123 -2.2542 2.1535 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170980.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = -77.775249 kcal Electronic energy + Delta-G solvation = -8938.999754 eV Core-core repulsion = 7047.326287 eV Total energy + Delta-G solvation = -1891.673466 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 176.037 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.78683 -36.49533 -34.26342 -30.24028 -27.72687 -25.00416 -21.23123 -18.97835 -17.63818 -16.53439 -16.29788 -15.69252 -15.30962 -14.86221 -13.92559 -13.67222 -13.28178 -12.90493 -12.70150 -12.59930 -12.34487 -12.03334 -11.41816 -11.32859 -10.79302 -10.47284 -8.66976 -8.25366 -6.52098 1.05617 1.42622 1.43348 1.52128 1.53429 2.35688 3.03393 3.87531 4.00959 4.10213 4.27703 4.44917 4.73036 4.86404 4.97677 5.31841 5.52681 5.69257 5.92967 6.55862 7.26045 8.78303 Molecular weight = 176.04amu Principal moments of inertia in cm(-1) A = 0.078497 B = 0.016360 C = 0.015548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.618036 B = 1711.064251 C = 1800.393272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.220 3.780 10 F -0.241 7.241 11 C -0.141 4.141 12 C -0.045 4.045 13 S -0.382 6.382 14 C -0.034 4.034 15 H 0.268 0.732 16 H 0.093 0.907 17 H 0.079 0.921 18 H 0.112 0.888 19 H 0.109 0.891 20 H 0.090 0.910 21 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.805 -4.069 1.922 6.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.615 4.615 8 H 0.096 0.904 9 C 0.200 3.800 10 F -0.222 7.222 11 C -0.179 4.179 12 C -0.192 4.192 13 S -0.156 6.156 14 C -0.182 4.182 15 H 0.077 0.923 16 H 0.112 0.888 17 H 0.098 0.902 18 H 0.130 0.870 19 H 0.128 0.872 20 H 0.108 0.892 21 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.632 -4.642 2.252 6.310 hybrid contribution 0.848 1.587 -0.461 1.857 sum 4.480 -3.055 1.791 5.711 Atomic orbital electron populations 1.70085 1.07648 1.28364 1.47557 1.25955 0.95723 1.03397 0.92542 0.85400 0.78233 0.77490 0.79312 1.19457 1.20955 1.18554 1.21697 0.94004 0.90272 1.55489 0.90386 1.19466 0.85716 0.95336 0.79456 1.92721 1.76817 1.97592 1.55047 1.22503 1.00155 0.92856 1.02430 1.23951 0.92249 1.00119 1.02921 1.87399 1.27838 1.12541 1.87835 1.24892 1.03544 0.88387 1.01397 0.92250 0.88840 0.90198 0.87000 0.87213 0.89202 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.93 11.43 21.45 0.25 -50.69 14 2 C 0.03 1.45 5.27 84.66 0.45 1.90 14 3 Si 0.97 41.33 29.54 68.60 2.03 43.36 14 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 14 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 14 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 14 7 C -0.58 -30.17 8.19 25.60 0.21 -29.96 14 8 H 0.08 3.85 7.54 -2.91 -0.02 3.83 14 9 C 0.22 10.94 0.87 -10.82 -0.01 10.93 14 10 F -0.24 -13.59 16.29 44.97 0.73 -12.86 14 11 C -0.14 -5.45 5.61 30.81 0.17 -5.28 14 12 C -0.04 -1.49 7.38 72.22 0.53 -0.95 14 13 S -0.38 -15.94 23.18 -56.49 -1.31 -17.25 14 14 C -0.03 -1.64 5.93 72.72 0.43 -1.21 14 15 H 0.27 14.39 8.31 -92.71 -0.77 13.62 14 16 H 0.09 3.32 7.63 -2.39 -0.02 3.30 14 17 H 0.08 2.97 8.10 -2.39 -0.02 2.95 14 18 H 0.11 3.05 8.14 -2.39 -0.02 3.03 14 19 H 0.11 3.16 8.14 -2.39 -0.02 3.15 14 20 H 0.09 4.87 7.08 -2.39 -0.02 4.85 14 21 H 0.09 3.99 8.10 -2.39 -0.02 3.97 14 Total: -1.00 -59.60 198.05 4.69 -54.90 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.22 Total: 7.11 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 1.78 Total: -24.57 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.25 Total: -50.69 kcal Atomic # 9 Polarization: -13.59 SS G_CDS: 0.73 Total: -12.86 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: -15.94 SS G_CDS: -1.31 Total: -17.25 kcal Total: -59.60 4.69 -54.90 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170980.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.873 kcal (2) G-P(sol) polarization free energy of solvation -59.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds