Wall clock time and date at job start Mon Mar 30 2020 02:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.53778 * 113.61142 * 278.86480 * 9 7 2 11 11 C 1.53954 * 87.01791 * 220.04461 * 10 9 7 12 12 C 1.52999 * 113.53997 * 270.81066 * 11 10 9 13 13 F 1.39904 * 109.47318 * 277.49629 * 12 11 10 14 14 F 1.39901 * 109.46915 * 37.49643 * 12 11 10 15 15 C 1.53773 * 113.61491 * 181.25681 * 9 7 2 16 16 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 17 17 H 1.09004 * 112.84797 * 50.05466 * 9 7 2 18 18 H 1.08998 * 113.61884 * 334.56323 * 10 9 7 19 19 H 1.09003 * 113.61403 * 105.47074 * 10 9 7 20 20 H 1.09001 * 113.74248 * 139.94473 * 11 10 9 21 21 H 1.08997 * 109.47319 * 157.49158 * 12 11 10 22 22 H 1.09007 * 113.61332 * 254.52893 * 15 9 7 23 23 H 1.08997 * 113.61794 * 25.43103 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 0.7555 -2.9244 1.3918 11 6 1.1513 -4.3611 1.0054 12 6 0.0304 -5.1383 0.3122 13 9 -0.8357 -5.6665 1.2756 14 9 -0.6800 -4.2784 -0.5323 15 6 2.1629 -3.7370 0.0297 16 1 -0.4851 0.8401 0.0004 17 1 0.4805 -2.5431 -0.7704 18 1 1.3469 -2.5136 2.2100 19 1 -0.3168 -2.7891 1.5338 20 1 1.6158 -4.9216 1.8167 21 1 0.4602 -5.9503 -0.2743 22 1 2.2253 -4.2568 -0.9263 23 1 3.1399 -3.5488 0.4749 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261188780.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:49 Heat of formation + Delta-G solvation = -112.805839 kcal Electronic energy + Delta-G solvation = -10624.867744 eV Core-core repulsion = 8301.295156 eV Total energy + Delta-G solvation = -2323.572588 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 176.071 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.80646 -47.81621 -39.28899 -34.43861 -29.69498 -26.90801 -26.28257 -23.27510 -20.13218 -18.86406 -18.13665 -17.86037 -16.91819 -16.56033 -15.19649 -14.97434 -14.51054 -14.13113 -13.74684 -13.49155 -13.30948 -12.99130 -12.80232 -12.41962 -11.94108 -11.85547 -11.14766 -10.71818 -10.60547 -10.39008 -8.10322 -6.21348 1.41732 1.43513 1.51211 2.44434 3.03196 3.19286 3.46099 3.56368 3.72982 4.31729 4.38857 4.56588 4.70955 5.04934 5.11005 5.14046 5.40632 5.61770 5.76531 6.02609 6.39483 6.90585 7.46616 8.99002 Molecular weight = 176.07amu Principal moments of inertia in cm(-1) A = 0.086453 B = 0.012733 C = 0.012070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.797069 B = 2198.512288 C = 2319.258517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.009 3.991 10 C -0.121 4.121 11 C -0.162 4.162 12 C 0.273 3.727 13 F -0.219 7.219 14 F -0.219 7.219 15 C -0.113 4.113 16 H 0.259 0.741 17 H 0.034 0.966 18 H 0.064 0.936 19 H 0.022 0.978 20 H 0.120 0.880 21 H 0.155 0.845 22 H 0.071 0.929 23 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 -8.940 0.857 9.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.159 4.159 11 C -0.181 4.181 12 C 0.220 3.780 13 F -0.201 7.201 14 F -0.201 7.201 15 C -0.150 4.150 16 H 0.068 0.932 17 H 0.052 0.948 18 H 0.083 0.917 19 H 0.041 0.959 20 H 0.138 0.862 21 H 0.172 0.828 22 H 0.090 0.910 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.840 -8.816 0.856 9.301 hybrid contribution -0.148 1.215 0.105 1.228 sum 2.692 -7.601 0.962 8.121 Atomic orbital electron populations 1.70128 1.07628 1.27264 1.51558 1.25873 0.95572 1.02800 0.94845 0.85651 0.78324 0.78889 0.79019 1.19327 1.21383 1.19375 1.21554 0.93095 0.92099 1.50181 0.92268 1.20195 0.94679 0.92758 0.93325 1.22851 0.98070 0.94177 1.00811 1.23475 0.96792 0.96787 1.01039 1.22088 0.83404 0.90367 0.82127 1.92916 1.73562 1.87074 1.66526 1.92961 1.81322 1.73571 1.72239 1.22882 0.97308 0.96893 0.97901 0.93212 0.94832 0.91699 0.95874 0.86182 0.82764 0.91005 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.37 14 2 C 0.01 0.42 5.46 84.65 0.46 0.88 14 3 Si 0.96 44.34 29.54 68.60 2.03 46.36 14 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 14 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 14 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 14 7 C -0.53 -29.65 8.76 25.60 0.22 -29.43 14 8 H 0.06 3.16 7.81 -2.91 -0.02 3.14 14 9 C 0.01 0.45 2.90 -11.02 -0.03 0.42 14 10 C -0.12 -5.64 6.95 31.18 0.22 -5.42 14 11 C -0.16 -5.63 4.29 -10.21 -0.04 -5.67 14 12 C 0.27 8.78 5.24 71.98 0.38 9.16 14 13 F -0.22 -7.37 17.34 44.97 0.78 -6.59 14 14 F -0.22 -9.12 14.52 44.97 0.65 -8.47 14 15 C -0.11 -4.23 7.20 31.12 0.22 -4.01 14 16 H 0.26 15.10 8.31 -92.71 -0.77 14.33 14 17 H 0.03 1.92 6.46 -2.39 -0.02 1.90 14 18 H 0.06 3.03 8.09 -2.39 -0.02 3.01 14 19 H 0.02 1.17 8.01 -2.39 -0.02 1.15 14 20 H 0.12 3.39 8.14 -2.39 -0.02 3.37 14 21 H 0.16 3.37 8.14 -2.39 -0.02 3.35 14 22 H 0.07 2.37 8.10 -2.38 -0.02 2.35 14 23 H 0.09 3.11 8.09 -2.39 -0.02 3.09 14 Total: -1.00 -64.89 207.98 6.37 -58.52 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 1.20 Total: 0.61 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 1.43 Total: -34.07 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.28 Total: -56.37 kcal Atomic # 9 Polarization: -16.50 SS G_CDS: 1.43 Total: -15.06 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.89 6.37 -58.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261188780.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.283 kcal (2) G-P(sol) polarization free energy of solvation -64.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds