Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99562 * 2 1 4 4 H 1.48493 * 109.47381 * 274.93766 * 3 2 1 5 5 H 1.48504 * 109.47178 * 34.94066 * 3 2 1 6 6 H 1.48500 * 109.47165 * 154.93841 * 3 2 1 7 7 C 1.37878 * 120.00837 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.98915 * 351.51219 * 7 2 1 9 9 C 1.50691 * 120.00491 * 171.51083 * 7 2 1 10 10 C 1.53005 * 110.56611 * 87.88605 * 9 7 2 11 11 F 1.39907 * 109.46745 * 52.92010 * 10 9 7 12 12 C 1.54506 * 110.51096 * 325.20955 * 9 7 2 13 13 C 1.54479 * 104.06171 * 241.35217 * 12 9 7 14 14 O 1.44420 * 104.90160 * 335.96457 * 13 12 9 15 15 C 1.44688 * 105.13645 * 40.49641 * 14 13 12 16 16 H 0.96993 * 120.00185 * 0.02562 * 1 2 3 17 17 H 1.08989 * 109.47324 * 172.92092 * 10 9 7 18 18 H 1.09004 * 109.47162 * 292.92420 * 10 9 7 19 19 H 1.09002 * 110.51325 * 122.70803 * 12 9 7 20 20 H 1.08999 * 110.51350 * 359.97438 * 12 9 7 21 21 H 1.09005 * 110.36863 * 94.85836 * 13 12 9 22 22 H 1.09000 * 110.37384 * 217.07954 * 13 12 9 23 23 H 1.09005 * 110.35631 * 200.66895 * 15 14 13 24 24 H 1.09008 * 110.45017 * 78.40376 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3922 2.1068 -1.3948 5 1 1.5025 2.6204 0.8019 6 1 3.5949 1.4125 0.5931 7 6 2.0047 -1.1940 0.0005 8 1 1.4735 -2.1241 0.1390 9 6 3.4992 -1.2011 -0.1921 10 6 4.2151 -1.0446 1.1511 11 9 3.7403 -2.0083 2.0475 12 6 3.9249 -0.0799 -1.1662 13 6 4.5805 -0.8346 -2.3438 14 8 5.0164 -2.0919 -1.7825 15 6 3.9481 -2.5006 -0.8964 16 1 -0.4850 0.8400 -0.0004 17 1 5.2874 -1.1776 1.0090 18 1 4.0223 -0.0494 1.5518 19 1 4.6453 0.5860 -0.6909 20 1 3.0543 0.4794 -1.5088 21 1 3.8529 -1.0051 -3.1374 22 1 5.4335 -0.2739 -2.7262 23 1 4.3162 -3.2207 -0.1656 24 1 3.1229 -2.9277 -1.4664 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261334197.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = -110.910629 kcal Electronic energy + Delta-G solvation = -10889.835904 eV Core-core repulsion = 8717.117282 eV Total energy + Delta-G solvation = -2172.718622 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 174.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.29016 -40.38607 -35.66535 -33.40336 -30.54049 -27.17026 -26.64069 -23.71334 -21.31878 -18.46385 -17.58204 -17.27169 -16.58490 -16.29002 -16.03034 -15.60072 -15.08021 -14.63821 -13.91261 -13.32542 -12.98965 -12.68846 -12.52217 -12.07365 -11.64324 -11.43543 -11.17793 -10.89358 -10.63988 -10.55279 -8.34311 -6.41053 1.27287 1.34549 1.46111 2.27131 2.95877 3.14043 3.74235 3.93702 4.06164 4.23695 4.32703 4.35862 4.54583 4.73567 4.76713 4.91908 4.96159 5.12463 5.24693 5.49590 5.84754 6.26574 6.63632 7.23976 8.81920 Molecular weight = 174.08amu Principal moments of inertia in cm(-1) A = 0.041915 B = 0.024809 C = 0.020695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.858486 B = 1128.333299 C = 1352.671652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.311 1.311 6 H -0.219 1.219 7 C -0.512 4.512 8 H 0.030 0.970 9 C -0.022 4.022 10 C 0.067 3.933 11 F -0.232 7.232 12 C -0.175 4.175 13 C 0.054 3.946 14 O -0.390 6.390 15 C 0.066 3.934 16 H 0.267 0.733 17 H 0.086 0.914 18 H 0.068 0.932 19 H 0.093 0.907 20 H 0.068 0.932 21 H 0.056 0.944 22 H 0.121 0.879 23 H 0.088 0.912 24 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.625 2.436 -2.226 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.240 1.240 6 H -0.142 1.142 7 C -0.550 4.550 8 H 0.048 0.952 9 C -0.023 4.023 10 C 0.012 3.988 11 F -0.214 7.214 12 C -0.212 4.212 13 C -0.023 4.023 14 O -0.310 6.310 15 C -0.011 4.011 16 H 0.076 0.924 17 H 0.104 0.896 18 H 0.086 0.914 19 H 0.111 0.889 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.139 0.861 23 H 0.106 0.894 24 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.661 2.372 -2.251 11.151 hybrid contribution -0.856 0.561 0.208 1.044 sum 9.805 2.933 -2.043 10.436 Atomic orbital electron populations 1.70061 1.08595 1.28318 1.51425 1.26107 0.95560 1.03474 0.93668 0.86077 0.80276 0.77550 0.78168 1.19235 1.23988 1.14176 1.20842 0.90565 0.93496 1.50084 0.95186 1.20413 0.94911 0.94090 0.92885 1.22499 0.97786 0.89843 0.88630 1.92651 1.91139 1.67185 1.70381 1.23531 1.00594 0.99246 0.97852 1.23429 0.99773 0.84309 0.94740 1.89024 1.41631 1.38633 1.61676 1.23444 0.88954 0.96775 0.91936 0.92402 0.89603 0.91353 0.88870 0.91394 0.92606 0.86119 0.89417 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.35 13.96 21.45 0.30 -58.05 14 2 C 0.01 0.52 5.28 84.66 0.45 0.96 14 3 Si 0.95 41.84 23.13 68.60 1.59 43.43 14 4 H -0.27 -10.91 6.72 99.48 0.67 -10.24 14 5 H -0.31 -14.13 7.11 99.48 0.71 -13.43 14 6 H -0.22 -8.17 4.13 99.48 0.41 -7.75 14 7 C -0.51 -28.59 8.21 25.60 0.21 -28.38 14 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 14 9 C -0.02 -0.95 0.53 -51.91 -0.03 -0.98 14 10 C 0.07 2.69 5.98 71.98 0.43 3.12 14 11 F -0.23 -10.49 16.74 44.97 0.75 -9.73 14 12 C -0.18 -6.64 3.95 31.61 0.12 -6.52 14 13 C 0.05 1.77 7.62 72.48 0.55 2.32 14 14 O -0.39 -14.45 11.67 -148.98 -1.74 -16.19 14 15 C 0.07 2.68 6.70 72.48 0.49 3.17 14 16 H 0.27 15.41 8.31 -92.71 -0.77 14.64 14 17 H 0.09 2.83 8.13 -2.39 -0.02 2.81 14 18 H 0.07 2.66 5.66 -2.38 -0.01 2.65 14 19 H 0.09 3.01 6.39 -2.39 -0.02 3.00 14 20 H 0.07 2.84 3.61 -2.39 -0.01 2.83 14 21 H 0.06 1.83 8.14 -2.38 -0.02 1.81 14 22 H 0.12 2.99 8.14 -2.39 -0.02 2.97 14 23 H 0.09 3.40 7.74 -2.38 -0.02 3.38 14 24 H 0.05 2.08 7.86 -2.38 -0.02 2.06 14 Total: -1.00 -64.20 193.76 3.98 -60.22 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 0.86 Total: 6.62 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 2.22 Total: -26.30 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.30 Total: -58.05 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.74 Total: -16.19 kcal Atomic # 9 Polarization: -10.49 SS G_CDS: 0.75 Total: -9.73 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.59 Total: 43.43 kcal Total: -64.20 3.98 -60.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334197.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.691 kcal (2) G-P(sol) polarization free energy of solvation -64.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds