Wall clock time and date at job start Mon Mar 30 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47241 * 2 1 4 4 N 1.31503 * 119.79978 * 269.98184 * 3 2 1 5 5 C 1.32063 * 121.98171 * 179.67870 * 4 3 2 6 6 C 1.38620 * 121.31666 * 0.63534 * 5 4 3 7 7 C 1.38010 * 119.42502 * 359.40356 * 6 5 4 8 8 C 1.40711 * 119.80211 * 90.00036 * 3 2 1 9 9 C 1.41407 * 120.66114 * 359.97438 * 8 3 2 10 10 H 1.08004 * 120.00017 * 335.03704 * 9 8 3 11 11 C 1.39950 * 120.00531 * 155.04034 * 9 8 3 12 12 N 1.30825 * 119.99515 * 344.21364 * 11 9 8 13 13 Si 1.86796 * 120.00244 * 164.21078 * 11 9 8 14 14 H 1.48498 * 109.47223 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47026 * 120.00406 * 13 11 9 16 16 H 1.48504 * 109.47152 * 240.00163 * 13 11 9 17 17 H 1.08998 * 109.46788 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.46768 * 299.99926 * 1 2 3 19 19 H 1.08999 * 109.47072 * 59.99954 * 1 2 3 20 20 H 1.09000 * 109.47194 * 239.99796 * 2 1 3 21 21 H 1.09002 * 109.47775 * 119.99842 * 2 1 3 22 22 H 1.08000 * 119.33650 * 180.31096 * 5 4 3 23 23 H 1.08004 * 120.28614 * 179.67387 * 6 5 4 24 24 H 1.08002 * 120.90473 * 180.30102 * 7 6 5 25 25 H 0.97003 * 119.99754 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2505 2.0368 -1.1411 5 6 2.6845 3.2831 -1.1914 6 6 2.9451 4.0025 -0.0355 7 6 2.7358 3.4103 1.1934 8 6 2.2655 2.0801 1.2210 9 6 2.0326 1.4231 2.4513 10 1 1.3254 0.6084 2.5030 11 6 2.7183 1.8284 3.6020 12 7 3.7803 2.5853 3.4980 13 14 2.1172 1.2889 5.2863 14 1 0.9060 0.4437 5.1323 15 1 3.1823 0.5078 5.9651 16 1 1.7859 2.4858 6.1005 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 1.8933 -0.5139 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 2.8446 3.7493 -2.1524 23 1 3.3046 5.0192 -0.0961 24 1 2.9263 3.9503 2.1091 25 1 4.2555 2.8665 4.2955 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306189489.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:32 Heat of formation + Delta-G solvation = 5.448806 kcal Electronic energy + Delta-G solvation = -10120.967577 eV Core-core repulsion = 8291.326514 eV Total energy + Delta-G solvation = -1829.641063 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.39849 -34.04505 -32.98664 -30.43771 -28.76983 -25.57613 -23.05840 -21.47241 -19.81748 -17.29118 -15.67896 -14.82643 -14.54054 -13.75838 -12.98178 -12.80877 -12.54260 -11.85265 -11.50715 -11.46498 -11.03248 -10.90893 -10.82042 -10.46403 -10.09313 -9.55226 -9.36555 -8.14417 -7.93450 -7.46863 -6.82456 -4.46011 2.64292 2.95554 3.02774 3.07942 3.20763 3.86025 4.61122 5.60360 5.75615 6.01139 6.22385 6.33520 6.37098 6.63102 6.70865 6.72314 6.95689 6.99833 7.09980 7.23278 7.37255 7.77783 7.90918 7.99597 8.46934 8.71171 8.77459 9.70842 10.08794 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.042769 B = 0.017670 C = 0.013158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.529556 B = 1584.220469 C = 2127.405130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C 0.010 3.990 4 N -0.470 5.470 5 C -0.039 4.039 6 C -0.157 4.157 7 C -0.138 4.138 8 C 0.069 3.931 9 C -0.448 4.448 10 H 0.086 0.914 11 C 0.073 3.927 12 N -0.793 5.793 13 Si 0.910 3.090 14 H -0.258 1.258 15 H -0.274 1.274 16 H -0.272 1.272 17 H 0.042 0.958 18 H 0.054 0.946 19 H 0.046 0.954 20 H 0.053 0.947 21 H 0.072 0.928 22 H 0.117 0.883 23 H 0.096 0.904 24 H 0.125 0.875 25 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -1.251 0.929 2.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.133 4.133 4 N -0.178 5.178 5 C -0.196 4.196 6 C -0.177 4.177 7 C -0.164 4.164 8 C 0.065 3.935 9 C -0.478 4.478 10 H 0.104 0.896 11 C -0.145 4.145 12 N -0.418 5.418 13 Si 0.734 3.266 14 H -0.182 1.182 15 H -0.199 1.199 16 H -0.197 1.197 17 H 0.061 0.939 18 H 0.073 0.927 19 H 0.065 0.935 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.135 0.865 23 H 0.114 0.886 24 H 0.143 0.857 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.499 -1.565 0.292 2.964 hybrid contribution 0.151 0.500 1.609 1.692 sum -2.348 -1.065 1.901 3.203 Atomic orbital electron populations 1.21674 0.96538 0.99870 1.01567 1.20004 0.94572 0.92807 1.01148 1.20997 1.07933 0.95997 0.88329 1.66762 1.10638 1.09968 1.30477 1.21628 1.09402 0.92246 0.96342 1.21607 1.02324 0.99218 0.94564 1.21672 1.03258 0.94990 0.96480 1.18327 0.90322 0.91726 0.93173 1.19622 1.20860 1.15427 0.91841 0.89617 1.25988 0.93308 0.93519 1.01670 1.69809 1.12790 1.27460 1.31755 0.86227 0.80022 0.79413 0.80946 1.18188 1.19882 1.19679 0.93865 0.92723 0.93474 0.92817 0.90988 0.86548 0.88558 0.85684 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 37.16 0.37 -2.25 15 2 C -0.05 -1.02 5.63 -27.88 -0.16 -1.18 15 3 C 0.01 0.25 6.11 -81.80 -0.50 -0.25 15 4 N -0.47 -12.01 10.25 -8.80 -0.09 -12.10 15 5 C -0.04 -0.95 11.17 -17.31 -0.19 -1.14 15 6 C -0.16 -3.77 10.09 -39.52 -0.40 -4.17 15 7 C -0.14 -3.63 8.80 -38.58 -0.34 -3.97 15 8 C 0.07 1.84 5.58 -106.67 -0.60 1.24 15 9 C -0.45 -11.51 8.16 -37.74 -0.31 -11.82 15 10 H 0.09 2.09 6.62 -52.48 -0.35 1.75 15 11 C 0.07 1.79 5.20 -17.34 -0.09 1.70 15 12 N -0.79 -20.13 10.91 55.55 0.61 -19.52 15 13 Si 0.91 18.16 29.59 -169.99 -5.03 13.13 15 14 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 16 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 17 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 18 H 0.05 1.06 7.90 -51.93 -0.41 0.65 15 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 21 H 0.07 1.54 6.76 -51.93 -0.35 1.19 15 22 H 0.12 2.45 8.06 -52.49 -0.42 2.02 15 23 H 0.10 2.01 8.06 -52.48 -0.42 1.59 15 24 H 0.13 3.33 6.24 -52.49 -0.33 3.00 15 25 H 0.28 6.46 8.30 -40.82 -0.34 6.12 15 LS Contribution 219.08 15.07 3.30 3.30 Total: -1.00 -27.79 219.08 -6.11 -33.91 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -2.68 Total: 3.12 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -2.21 Total: -21.83 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.52 Total: -31.63 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -27.79 -6.11 -33.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306189489.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.354 kcal (2) G-P(sol) polarization free energy of solvation -27.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds