Wall clock time and date at job start Mon Mar 30 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47241 * 2 1 4 4 N 1.31503 * 119.79978 * 269.98184 * 3 2 1 5 5 C 1.32063 * 121.98171 * 179.67870 * 4 3 2 6 6 C 1.38620 * 121.31666 * 0.63534 * 5 4 3 7 7 C 1.38010 * 119.42502 * 359.40356 * 6 5 4 8 8 C 1.40711 * 119.80211 * 90.00036 * 3 2 1 9 9 C 1.41407 * 120.66114 * 359.97438 * 8 3 2 10 10 H 1.08004 * 120.00017 * 335.03704 * 9 8 3 11 11 C 1.39950 * 120.00531 * 155.04034 * 9 8 3 12 12 N 1.30825 * 119.99515 * 344.21364 * 11 9 8 13 13 Si 1.86796 * 120.00244 * 164.21078 * 11 9 8 14 14 H 1.48498 * 109.47223 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47026 * 120.00406 * 13 11 9 16 16 H 1.48504 * 109.47152 * 240.00163 * 13 11 9 17 17 H 1.08998 * 109.46788 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.46768 * 299.99926 * 1 2 3 19 19 H 1.08999 * 109.47072 * 59.99954 * 1 2 3 20 20 H 1.09000 * 109.47194 * 239.99796 * 2 1 3 21 21 H 1.09002 * 109.47775 * 119.99842 * 2 1 3 22 22 H 1.08000 * 119.33650 * 180.31096 * 5 4 3 23 23 H 1.08004 * 120.28614 * 179.67387 * 6 5 4 24 24 H 1.08002 * 120.90473 * 180.30102 * 7 6 5 25 25 H 0.97003 * 119.99754 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2505 2.0368 -1.1411 5 6 2.6845 3.2831 -1.1914 6 6 2.9451 4.0025 -0.0355 7 6 2.7358 3.4103 1.1934 8 6 2.2655 2.0801 1.2210 9 6 2.0326 1.4231 2.4513 10 1 1.3254 0.6084 2.5030 11 6 2.7183 1.8284 3.6020 12 7 3.7803 2.5853 3.4980 13 14 2.1172 1.2889 5.2863 14 1 0.9060 0.4437 5.1323 15 1 3.1823 0.5078 5.9651 16 1 1.7859 2.4858 6.1005 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 1.8933 -0.5139 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 2.8446 3.7493 -2.1524 23 1 3.3046 5.0192 -0.0961 24 1 2.9263 3.9503 2.1091 25 1 4.2555 2.8665 4.2955 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306189489.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:32 Heat of formation + Delta-G solvation = -10.450375 kcal Electronic energy + Delta-G solvation = -10121.657018 eV Core-core repulsion = 8291.326514 eV Total energy + Delta-G solvation = -1830.330503 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.29768 -35.92939 -34.72443 -32.37195 -30.56969 -27.47791 -24.79162 -23.39059 -21.65584 -19.20005 -17.53041 -16.63521 -16.38827 -15.50155 -14.72646 -14.51090 -14.32458 -13.63720 -13.30337 -13.23446 -12.76610 -12.63083 -12.50223 -12.06056 -11.74551 -11.38547 -11.18537 -10.10162 -9.86998 -9.38623 -8.67101 -6.40587 0.79511 1.06184 1.40013 1.51671 1.55569 2.19248 2.74142 3.69316 4.00123 4.35323 4.51086 4.62293 4.73381 4.84867 4.91148 5.09544 5.13342 5.19227 5.42155 5.43416 5.55831 5.85767 5.98684 6.06562 6.54405 6.79841 6.84499 7.77184 8.27360 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.042769 B = 0.017670 C = 0.013158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.529556 B = 1584.220469 C = 2127.405130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.047 4.047 3 C -0.007 4.007 4 N -0.485 5.485 5 C -0.049 4.049 6 C -0.157 4.157 7 C -0.165 4.165 8 C 0.039 3.961 9 C -0.471 4.471 10 H 0.091 0.909 11 C 0.032 3.968 12 N -0.824 5.824 13 Si 0.985 3.015 14 H -0.252 1.252 15 H -0.266 1.266 16 H -0.266 1.266 17 H 0.077 0.923 18 H 0.042 0.958 19 H 0.042 0.958 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.148 0.852 23 H 0.126 0.874 24 H 0.114 0.886 25 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 -1.782 1.374 3.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.085 4.085 3 C -0.149 4.149 4 N -0.193 5.193 5 C -0.205 4.205 6 C -0.177 4.177 7 C -0.192 4.192 8 C 0.035 3.965 9 C -0.500 4.500 10 H 0.109 0.891 11 C -0.183 4.183 12 N -0.450 5.450 13 Si 0.805 3.195 14 H -0.175 1.175 15 H -0.191 1.191 16 H -0.191 1.191 17 H 0.096 0.904 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.166 0.834 23 H 0.144 0.856 24 H 0.132 0.868 25 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.038 -2.092 0.716 3.757 hybrid contribution 0.369 0.705 1.405 1.615 sum -2.669 -1.388 2.121 3.680 Atomic orbital electron populations 1.21588 0.94387 1.01924 1.00791 1.20063 0.96398 0.90683 1.01334 1.21565 1.07711 0.97605 0.88029 1.66852 1.11207 1.10742 1.30535 1.22192 1.08539 0.92042 0.97731 1.21904 1.01467 1.00559 0.93814 1.21746 1.04996 0.95401 0.97015 1.18719 0.91147 0.92334 0.94314 1.19881 1.21549 1.16117 0.92448 0.89055 1.26884 0.92909 0.93207 1.05308 1.69859 1.13644 1.28107 1.33344 0.85106 0.79617 0.79136 0.75635 1.17541 1.19104 1.19077 0.90377 0.93838 0.93835 0.91995 0.91280 0.83439 0.85627 0.86831 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.89 71.98 0.71 -3.95 15 2 C -0.05 -1.98 5.63 29.85 0.17 -1.81 15 3 C -0.01 -0.35 6.11 43.21 0.26 -0.08 15 4 N -0.48 -24.47 10.25 -181.74 -1.86 -26.33 15 5 C -0.05 -2.29 11.17 84.75 0.95 -1.34 15 6 C -0.16 -7.49 10.09 22.31 0.23 -7.26 15 7 C -0.17 -8.81 8.80 22.92 0.20 -8.61 15 8 C 0.04 2.11 5.58 -21.19 -0.12 2.00 15 9 C -0.47 -24.30 8.16 23.47 0.19 -24.10 15 10 H 0.09 4.45 6.62 -2.91 -0.02 4.43 15 11 C 0.03 1.57 5.20 85.26 0.44 2.01 15 12 N -0.82 -42.01 10.91 21.83 0.24 -41.77 15 13 Si 0.98 36.55 29.59 68.60 2.03 38.58 15 14 H -0.25 -9.03 7.11 99.48 0.71 -8.32 15 15 H -0.27 -9.52 7.11 99.48 0.71 -8.81 15 16 H -0.27 -9.57 7.11 99.48 0.71 -8.86 15 17 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 18 H 0.04 1.64 7.90 -2.39 -0.02 1.62 15 19 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.06 2.47 8.14 -2.39 -0.02 2.45 15 21 H 0.07 2.92 6.76 -2.39 -0.02 2.91 15 22 H 0.15 5.86 8.06 -2.91 -0.02 5.84 15 23 H 0.13 5.07 8.06 -2.91 -0.02 5.05 15 24 H 0.11 6.19 6.24 -2.91 -0.02 6.17 15 25 H 0.29 13.29 8.30 -92.71 -0.77 12.52 15 Total: -1.00 -58.51 219.08 4.61 -53.89 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.17 Total: 18.78 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 3.03 Total: -43.15 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -1.63 Total: -68.10 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -58.51 4.61 -53.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306189489.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.442 kcal (2) G-P(sol) polarization free energy of solvation -58.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds