Wall clock time and date at job start Mon Mar 30 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39899 * 113.01172 * 2 1 4 4 C 1.53932 * 113.73192 * 228.36665 * 2 1 3 5 5 N 1.47959 * 86.18045 * 221.92193 * 4 2 1 6 6 C 1.46902 * 110.99905 * 137.58303 * 5 4 2 7 7 C 1.50699 * 109.47319 * 70.64321 * 6 5 4 8 8 H 1.07998 * 119.99582 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00183 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00055 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99970 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47283 * 89.99991 * 11 9 7 13 13 H 1.48501 * 109.47454 * 210.00064 * 11 9 7 14 14 H 1.48504 * 109.47268 * 330.00314 * 11 9 7 15 15 C 1.47957 * 90.76368 * 24.69138 * 5 4 2 16 16 H 1.09001 * 109.47019 * 288.36226 * 1 2 3 17 17 H 1.09007 * 109.47031 * 48.35611 * 1 2 3 18 18 H 1.09000 * 109.47575 * 168.35728 * 1 2 3 19 19 H 1.09004 * 113.75969 * 336.23988 * 4 2 1 20 20 H 1.08999 * 113.76302 * 107.60444 * 4 2 1 21 21 H 1.09007 * 109.46697 * 190.64055 * 6 5 4 22 22 H 1.09001 * 109.46915 * 310.63777 * 6 5 4 23 23 H 0.96997 * 119.99646 * 180.02562 * 10 9 7 24 24 H 1.09000 * 113.75975 * 220.99328 * 15 5 4 25 25 H 1.08998 * 113.76273 * 89.62912 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 2.0769 1.2877 0.0000 4 6 2.1495 -0.9362 -1.0532 5 7 3.1154 -1.3197 -0.0001 6 6 3.3458 -2.7706 -0.0002 7 6 4.1330 -3.1542 -1.2266 8 1 4.4319 -2.3960 -1.9353 9 6 4.4707 -4.4730 -1.4445 10 7 5.1582 -4.8077 -2.5145 11 14 3.9532 -5.7844 -0.2190 12 1 2.6221 -6.3210 -0.6007 13 1 4.9498 -6.8852 -0.2214 14 1 3.8759 -5.1895 1.1395 15 6 2.1495 -0.9364 1.0531 16 1 -0.3633 0.3237 0.9754 17 1 -0.3633 0.6829 -0.7680 18 1 -0.3634 -1.0065 -0.2074 19 1 1.4904 -1.7479 -1.3613 20 1 2.6025 -0.4120 -1.8947 21 1 3.9054 -3.0496 0.8927 22 1 2.3878 -3.2906 -0.0059 23 1 5.3954 -5.7356 -2.6679 24 1 2.6025 -0.4121 1.8946 25 1 1.4904 -1.7480 1.3612 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306404789.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:07 Heat of formation + Delta-G solvation = -17.794557 kcal Electronic energy + Delta-G solvation = -10234.657306 eV Core-core repulsion = 8163.695162 eV Total energy + Delta-G solvation = -2070.962144 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 173.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.26803 -38.77933 -32.95340 -31.09775 -28.22299 -25.84023 -24.11548 -20.63796 -19.36753 -16.90729 -15.75000 -15.51663 -15.11757 -14.20361 -13.62276 -13.44547 -13.03628 -12.49107 -12.36751 -12.08860 -11.94189 -11.38864 -10.96943 -10.67207 -9.98482 -9.86147 -9.72984 -9.32549 -8.64878 -7.99690 -6.10161 -4.08958 3.23421 3.31973 3.33730 4.34875 4.37345 4.45929 4.73608 5.00907 5.21049 5.54375 5.65215 5.69955 5.86117 5.97867 6.08117 6.21817 6.42011 6.58663 6.73406 7.22621 7.68487 7.74479 8.54978 8.97930 9.50445 11.03022 Molecular weight = 173.09amu Principal moments of inertia in cm(-1) A = 0.078238 B = 0.012344 C = 0.011636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.798199 B = 2267.807583 C = 2405.790085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 F -0.190 7.190 4 C 0.009 3.991 5 N -0.464 5.464 6 C 0.128 3.872 7 C -0.514 4.514 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.898 5.898 11 Si 0.877 3.123 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.267 1.267 15 C -0.021 4.021 16 H 0.065 0.935 17 H 0.067 0.933 18 H 0.076 0.924 19 H 0.083 0.917 20 H 0.091 0.909 21 H 0.033 0.967 22 H -0.007 1.007 23 H 0.264 0.736 24 H 0.089 0.911 25 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 5.622 5.770 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.058 3.942 3 F -0.170 7.170 4 C -0.121 4.121 5 N -0.186 5.186 6 C 0.001 3.999 7 C -0.553 4.553 8 H 0.098 0.902 9 C -0.133 4.133 10 N -0.537 5.537 11 Si 0.704 3.296 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.191 1.191 15 C -0.150 4.150 16 H 0.084 0.916 17 H 0.086 0.914 18 H 0.095 0.905 19 H 0.101 0.899 20 H 0.109 0.891 21 H 0.051 0.949 22 H 0.010 0.990 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.702 5.744 5.675 11.871 hybrid contribution -0.850 -1.257 0.568 1.620 sum -9.553 4.487 6.243 12.262 Atomic orbital electron populations 1.22182 0.93326 1.03520 1.02942 1.22439 0.92724 0.79333 0.99663 1.92813 1.87363 1.39652 1.97203 1.24369 0.94414 0.96929 0.96365 1.68551 1.29797 1.19368 1.00882 1.20703 0.95752 0.84252 0.99171 1.20961 1.34235 0.94138 1.05924 0.90239 1.24922 0.94723 0.98379 0.95251 1.69896 1.38803 1.18165 1.26796 0.86837 0.78608 0.81799 0.82374 1.20271 1.20989 1.19145 1.24587 0.95525 0.97859 0.97064 0.91595 0.91380 0.90538 0.89894 0.89106 0.94890 0.98981 0.92560 0.89278 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.59 37.16 0.36 -1.61 15 2 C 0.08 1.26 2.27 -89.69 -0.20 1.05 15 3 F -0.19 -3.41 17.28 2.25 0.04 -3.37 15 4 C 0.01 0.16 6.92 -2.77 -0.02 0.14 15 5 N -0.46 -10.18 6.25 -239.71 -1.50 -11.68 15 6 C 0.13 3.15 3.65 -4.98 -0.02 3.14 15 7 C -0.51 -14.87 9.40 -34.44 -0.32 -15.19 15 8 H 0.08 2.52 8.04 -52.49 -0.42 2.10 15 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 10 N -0.90 -27.65 13.96 55.43 0.77 -26.87 15 11 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 15 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 15 14 H -0.27 -6.27 6.54 56.52 0.37 -5.90 15 15 C -0.02 -0.36 7.44 -2.77 -0.02 -0.38 15 16 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 17 H 0.07 0.76 8.14 -51.92 -0.42 0.34 15 18 H 0.08 0.86 7.94 -51.93 -0.41 0.45 15 19 H 0.08 1.53 7.60 -51.93 -0.39 1.14 15 20 H 0.09 1.79 8.14 -51.93 -0.42 1.36 15 21 H 0.03 0.83 7.20 -51.93 -0.37 0.45 15 22 H -0.01 -0.18 7.12 -51.93 -0.37 -0.55 15 23 H 0.26 7.58 8.31 -40.82 -0.34 7.25 15 24 H 0.09 1.45 8.14 -51.93 -0.42 1.03 15 25 H 0.08 1.19 7.75 -51.93 -0.40 0.78 15 LS Contribution 216.97 15.07 3.27 3.27 Total: -1.00 -31.12 216.97 -5.64 -36.76 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -3.23 Total: -3.92 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.33 Total: -10.93 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.73 Total: -38.55 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -31.12 -5.64 -36.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306404789.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.968 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds