Wall clock time and date at job start Mon Mar 30 2020 02:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38453 * 119.99629 * 2 1 4 4 H 1.08002 * 120.00250 * 331.66889 * 3 2 1 5 5 C 1.40569 * 119.99951 * 151.67005 * 3 2 1 6 6 N 1.30618 * 119.99945 * 340.33006 * 5 3 2 7 7 Si 1.86799 * 120.00064 * 160.33207 * 5 3 2 8 8 H 1.48501 * 109.47013 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47383 * 119.99903 * 7 5 3 10 10 H 1.48499 * 109.46807 * 239.99797 * 7 5 3 11 11 C 1.38836 * 120.00538 * 179.97438 * 2 1 3 12 12 C 1.40423 * 119.99663 * 354.47610 * 11 2 1 13 13 C 1.38989 * 126.16817 * 174.90465 * 12 11 2 14 14 C 1.39992 * 106.48075 * 179.80297 * 13 12 11 15 15 C 1.35456 * 107.30019 * 0.35341 * 14 13 12 16 16 O 1.34204 * 109.15223 * 359.64051 * 15 14 13 17 17 H 1.08999 * 109.46797 * 242.04765 * 1 2 3 18 18 H 1.08994 * 109.47223 * 2.05051 * 1 2 3 19 19 H 1.09004 * 109.46617 * 122.05266 * 1 2 3 20 20 H 0.96998 * 120.00015 * 180.02562 * 6 5 3 21 21 H 1.07993 * 120.00025 * 174.48001 * 11 2 1 22 22 H 1.07992 * 126.75697 * 0.02562 * 13 12 11 23 23 H 1.07995 * 126.34406 * 180.26034 * 14 13 12 24 24 H 1.07998 * 125.41654 * 179.90051 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1991 0.0000 4 1 1.7562 2.0784 -0.4439 5 6 3.4786 1.2721 0.5777 6 7 3.8614 0.3630 1.4340 7 14 4.6314 2.6691 0.1209 8 1 3.9645 3.5596 -0.8628 9 1 4.9751 3.4458 1.3390 10 1 5.8713 2.1122 -0.4773 11 6 2.2013 -1.2023 0.0005 12 6 1.5041 -2.4155 0.1181 13 6 2.0542 -3.6892 0.0341 14 6 0.9982 -4.5905 0.2133 15 6 -0.1294 -3.8604 0.3874 16 8 0.1783 -2.5553 0.3328 17 1 -0.3633 -0.4817 0.9078 18 1 -0.3633 1.0269 -0.0368 19 1 -0.3633 -0.5454 -0.8711 20 1 4.7441 0.4136 1.8329 21 1 3.2775 -1.2044 -0.0894 22 1 3.0925 -3.9350 -0.1326 23 1 1.0692 -5.6681 0.2113 24 1 -1.1179 -4.2644 0.5491 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306460031.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:52 Heat of formation + Delta-G solvation = -10.794641 kcal Electronic energy + Delta-G solvation = -10110.089551 eV Core-core repulsion = 8182.025457 eV Total energy + Delta-G solvation = -1928.064094 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.67709 -37.33816 -34.09973 -33.39965 -30.67388 -28.08654 -26.28046 -22.19288 -22.08160 -20.65914 -18.48208 -17.00004 -16.95869 -16.41707 -15.27570 -15.11090 -14.13854 -13.70061 -13.50824 -13.47960 -13.04690 -12.84025 -12.57289 -12.43850 -11.89461 -11.58215 -11.17559 -10.61744 -10.17805 -8.91042 -8.46940 -6.27028 0.64921 1.37024 1.43286 1.55113 1.84661 2.13455 2.45244 2.75782 3.20314 4.43455 4.55355 4.65697 4.74115 4.90417 4.97107 5.02385 5.24209 5.26514 5.39624 5.71681 5.96460 6.06545 6.16689 6.42901 6.68134 6.91288 7.03413 8.11768 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.077101 B = 0.012110 C = 0.010869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.070903 B = 2311.635605 C = 2575.585654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.074 3.926 3 C -0.453 4.453 4 H 0.097 0.903 5 C 0.032 3.968 6 N -0.780 5.780 7 Si 0.989 3.011 8 H -0.247 1.247 9 H -0.260 1.260 10 H -0.267 1.267 11 C -0.360 4.360 12 C 0.123 3.877 13 C -0.372 4.372 14 C -0.184 4.184 15 C -0.148 4.148 16 O -0.201 6.201 17 H 0.056 0.944 18 H 0.065 0.935 19 H 0.054 0.946 20 H 0.296 0.704 21 H 0.095 0.905 22 H 0.118 0.882 23 H 0.156 0.844 24 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 0.871 -1.223 2.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.070 3.930 3 C -0.479 4.479 4 H 0.115 0.885 5 C -0.189 4.189 6 N -0.402 5.402 7 Si 0.808 3.192 8 H -0.170 1.170 9 H -0.184 1.184 10 H -0.192 1.192 11 C -0.382 4.382 12 C 0.074 3.926 13 C -0.391 4.391 14 C -0.203 4.203 15 C -0.213 4.213 16 O -0.100 6.100 17 H 0.075 0.925 18 H 0.084 0.916 19 H 0.072 0.928 20 H 0.108 0.892 21 H 0.113 0.887 22 H 0.136 0.864 23 H 0.174 0.826 24 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.886 1.007 -1.014 2.366 hybrid contribution 0.920 -0.069 0.067 0.925 sum -0.966 0.938 -0.947 1.646 Atomic orbital electron populations 1.20871 0.93468 1.00930 1.00884 1.19781 0.93533 0.93487 0.86183 1.19864 1.00768 0.97094 1.30137 0.88535 1.27227 0.99777 0.99997 0.91947 1.69857 1.20240 1.33113 1.16991 0.85056 0.77206 0.77151 0.79775 1.16983 1.18432 1.19185 1.19273 0.96383 0.87898 1.34602 1.20367 0.80047 0.95930 0.96289 1.21748 0.99760 0.92342 1.25279 1.21613 0.92578 1.00207 1.05895 1.24333 1.01101 0.80279 1.15560 1.84207 1.25241 1.28022 1.72562 0.92505 0.91574 0.92770 0.89249 0.88705 0.86426 0.82598 0.76188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 8.37 71.24 0.60 -4.16 14 2 C 0.07 3.90 5.69 -19.67 -0.11 3.79 14 3 C -0.45 -22.91 8.84 22.89 0.20 -22.71 14 4 H 0.10 4.46 7.93 -2.91 -0.02 4.44 14 5 C 0.03 1.56 5.01 85.44 0.43 1.99 14 6 N -0.78 -40.37 11.38 21.94 0.25 -40.12 14 7 Si 0.99 35.47 29.61 68.60 2.03 37.50 14 8 H -0.25 -8.41 7.11 99.48 0.71 -7.70 14 9 H -0.26 -8.80 7.11 99.48 0.71 -8.10 14 10 H -0.27 -9.48 7.11 99.48 0.71 -8.77 14 11 C -0.36 -20.42 8.39 22.95 0.19 -20.23 14 12 C 0.12 6.65 6.72 22.98 0.15 6.80 14 13 C -0.37 -18.66 10.93 22.88 0.25 -18.41 14 14 C -0.18 -7.74 10.86 22.05 0.24 -7.50 14 15 C -0.15 -6.03 12.07 67.18 0.81 -5.22 14 16 O -0.20 -9.79 7.42 -8.87 -0.07 -9.86 14 17 H 0.06 2.61 7.05 -2.39 -0.02 2.59 14 18 H 0.07 2.63 7.96 -2.39 -0.02 2.61 14 19 H 0.05 2.37 7.71 -2.38 -0.02 2.35 14 20 H 0.30 13.66 8.29 -92.71 -0.77 12.89 14 21 H 0.10 5.73 6.65 -2.91 -0.02 5.71 14 22 H 0.12 5.77 8.06 -2.91 -0.02 5.74 14 23 H 0.16 5.29 8.06 -2.91 -0.02 5.26 14 24 H 0.22 6.53 8.06 -2.91 -0.02 6.51 14 Total: -1.00 -60.75 216.36 6.16 -54.59 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 1.19 Total: 23.54 kcal Atomic # 6 Polarization: -68.42 SS G_CDS: 2.76 Total: -65.65 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.25 Total: -40.12 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.07 Total: -9.86 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -60.75 6.16 -54.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306460031.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.795 kcal (2) G-P(sol) polarization free energy of solvation -60.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds