Wall clock time and date at job start Mon Mar 30 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.40397 * 120.48922 * 179.58630 * 3 2 1 5 5 C 1.38737 * 118.56863 * 179.97438 * 4 3 2 6 6 C 1.37784 * 119.47218 * 359.76977 * 5 4 3 7 7 N 1.33521 * 120.96589 * 0.50739 * 6 5 4 8 8 C 1.34586 * 119.22671 * 179.73114 * 7 6 5 9 9 H 1.08000 * 119.99701 * 149.11482 * 8 7 6 10 10 C 1.39974 * 119.99925 * 329.38540 * 8 7 6 11 11 N 1.30814 * 120.00098 * 342.39475 * 10 8 7 12 12 Si 1.86794 * 119.99818 * 162.39130 * 10 8 7 13 13 H 1.48498 * 109.47217 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47063 * 120.00081 * 12 10 8 15 15 H 1.48498 * 109.47354 * 239.99904 * 12 10 8 16 16 C 1.33331 * 121.54137 * 359.45721 * 7 6 5 17 17 H 1.07997 * 120.72146 * 0.02562 * 4 3 2 18 18 H 1.07997 * 120.26593 * 180.02562 * 5 4 3 19 19 H 1.07999 * 119.51480 * 180.25965 * 6 5 4 20 20 H 0.97001 * 120.00218 * 179.97438 * 11 10 8 21 21 H 1.08006 * 119.78637 * 180.27789 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2798 1.2108 -0.0087 5 6 4.6664 1.1649 -0.0079 6 6 5.3043 -0.0563 0.0063 7 7 4.6075 -1.1953 0.0090 8 6 5.2666 -2.3688 0.0175 9 1 4.8291 -3.2303 0.5001 10 6 6.5214 -2.4712 -0.5942 11 7 6.9052 -1.5644 -1.4554 12 14 7.6480 -3.9026 -0.1806 13 1 6.9845 -4.7834 0.8139 14 1 7.9359 -4.6782 -1.4138 15 1 8.9189 -3.3845 0.3863 16 6 3.2742 -1.1973 0.0090 17 1 2.7593 2.1570 -0.0152 18 1 5.2413 2.0791 -0.0140 19 1 6.3837 -0.0928 0.0113 20 1 7.7749 -1.6351 -1.8790 21 1 2.7391 -2.1355 0.0158 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306698500.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:05 Heat of formation + Delta-G solvation = 127.825578 kcal Electronic energy + Delta-G solvation = -9349.188221 eV Core-core repulsion = 7500.395119 eV Total energy + Delta-G solvation = -1848.793101 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 175.057 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.00238 -38.30106 -36.71273 -34.75345 -32.96662 -28.83118 -26.38064 -25.16076 -22.28034 -19.47488 -18.70190 -17.95816 -17.50082 -16.61132 -16.14383 -15.59957 -14.81334 -14.63892 -14.30756 -14.10200 -13.59319 -13.39350 -12.99962 -12.97147 -12.17438 -11.93879 -11.20207 -10.65097 -9.55908 -7.52926 -0.78120 -0.54714 1.08646 1.24869 1.43009 1.57377 1.61222 1.76586 2.07682 2.15767 2.49084 2.61689 3.44541 3.52696 3.68381 3.79573 4.21792 4.39839 4.69430 4.71372 4.80211 4.93227 5.53944 5.87192 6.03556 6.24409 7.38198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C 0.252 3.748 3 C 0.010 3.990 4 C -0.100 4.100 5 C -0.086 4.086 6 C 0.035 3.965 7 N -0.132 5.132 8 C -0.295 4.295 9 H 0.161 0.839 10 C 0.049 3.951 11 N -0.740 5.740 12 Si 0.960 3.040 13 H -0.243 1.243 14 H -0.253 1.253 15 H -0.251 1.251 16 C 0.012 3.988 17 H 0.150 0.850 18 H 0.162 0.838 19 H 0.187 0.813 20 H 0.325 0.675 21 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 1.479 1.930 3.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.061 5.061 2 C -0.065 4.065 3 C 0.006 3.994 4 C -0.127 4.127 5 C -0.105 4.105 6 C -0.101 4.101 7 N 0.222 4.778 8 C -0.432 4.432 9 H 0.178 0.822 10 C -0.179 4.179 11 N -0.361 5.361 12 Si 0.778 3.222 13 H -0.166 1.166 14 H -0.177 1.177 15 H -0.175 1.175 16 C -0.127 4.127 17 H 0.168 0.832 18 H 0.180 0.820 19 H 0.204 0.796 20 H 0.139 0.861 21 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.964 1.494 1.737 2.486 hybrid contribution 0.880 -0.381 -0.131 0.968 sum 1.844 1.113 1.606 2.686 Atomic orbital electron populations 1.81366 1.11580 1.06023 1.07129 1.25082 0.91918 0.94791 0.94665 1.15756 0.85355 0.93691 1.04574 1.21653 0.94033 0.97382 0.99670 1.21453 0.94082 0.97908 0.97021 1.22818 1.00880 0.84280 1.02072 1.38265 1.04931 1.08395 1.26220 1.21529 1.00754 0.89115 1.31806 0.82173 1.26519 0.97595 1.01790 0.91969 1.69428 1.21836 1.32370 1.12505 0.85222 0.78469 0.77274 0.81235 1.16594 1.17679 1.17466 1.22275 0.83485 0.99839 1.07127 0.83179 0.82031 0.79596 0.86082 0.80062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -1.14 18.54 41.84 0.78 -0.36 14 2 C 0.25 -0.02 15.36 -22.47 -0.35 -0.36 14 3 C 0.01 -0.02 5.74 -106.85 -0.61 -0.64 14 4 C -0.10 0.36 9.92 -38.59 -0.38 -0.02 14 5 C -0.09 0.33 10.08 -39.56 -0.40 -0.07 14 6 C 0.04 -0.06 8.99 -16.98 -0.15 -0.22 14 7 N -0.13 0.15 2.58 -62.28 -0.16 -0.01 14 8 C -0.30 0.12 9.28 -15.69 -0.15 -0.03 14 9 H 0.16 -0.36 7.90 -52.49 -0.41 -0.78 14 10 C 0.05 0.02 4.93 -17.33 -0.09 -0.06 14 11 N -0.74 -1.21 11.25 55.55 0.62 -0.58 14 12 Si 0.96 -0.38 29.59 -169.99 -5.03 -5.41 14 13 H -0.24 0.06 7.11 56.52 0.40 0.46 14 14 H -0.25 -0.26 7.11 56.52 0.40 0.15 14 15 H -0.25 -0.11 7.11 56.52 0.40 0.30 14 16 C 0.01 -0.03 9.94 -16.59 -0.16 -0.19 14 17 H 0.15 -0.80 8.06 -52.49 -0.42 -1.22 14 18 H 0.16 -1.04 8.06 -52.49 -0.42 -1.46 14 19 H 0.19 -0.30 6.18 -52.49 -0.32 -0.62 14 20 H 0.33 0.24 8.30 -40.82 -0.34 -0.10 14 21 H 0.18 -0.79 8.02 -52.48 -0.42 -1.21 14 LS Contribution 204.02 15.07 3.07 3.07 Total: 0.00 -5.23 204.02 -4.14 -9.37 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -1.14 Total: -4.49 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.29 Total: -1.59 kcal Atomic # 7 Polarization: -2.19 SS G_CDS: 1.24 Total: -0.95 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: -5.03 Total: -5.41 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -5.23 -4.14 -9.37 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306698500.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.195 kcal (2) G-P(sol) polarization free energy of solvation -5.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds