Wall clock time and date at job start Mon Mar 30 2020 02:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48492 * 109.47512 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46763 * 120.00635 * 3 2 1 6 6 H 1.48504 * 109.47002 * 239.99965 * 3 2 1 7 7 C 1.39927 * 119.99338 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99730 * 154.57586 * 7 2 1 9 9 C 1.41037 * 120.00493 * 334.57116 * 7 2 1 10 10 C 1.40731 * 120.30643 * 334.48955 * 9 7 2 11 11 C 1.36448 * 119.94964 * 180.02562 * 10 9 7 12 12 C 1.38898 * 120.60242 * 0.02562 * 11 10 9 13 13 C 1.38167 * 120.62136 * 359.97438 * 12 11 10 14 14 C 1.38748 * 120.02948 * 359.71692 * 13 12 11 15 15 N 1.38725 * 120.29794 * 180.27733 * 14 13 12 16 16 N 1.36600 * 119.99922 * 0.30073 * 15 14 13 17 17 H 0.96996 * 120.00214 * 174.16833 * 1 2 3 18 18 H 1.08003 * 120.02588 * 359.97438 * 10 9 7 19 19 H 1.08005 * 119.69763 * 180.02562 * 11 10 9 20 20 H 1.07995 * 119.69171 * 179.97438 * 12 11 10 21 21 H 1.08007 * 119.98214 * 179.97438 * 13 12 11 22 22 H 0.97001 * 120.00249 * 180.29878 * 15 14 13 23 23 H 1.00900 * 110.99813 * 56.04668 * 16 15 14 24 24 H 1.00905 * 111.00156 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2779 2.7464 0.0006 5 1 3.0967 1.6962 1.2125 6 1 3.0966 1.6964 -1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0099 -1.2571 -0.4021 9 6 1.4056 -2.3744 0.5234 10 6 0.3931 -2.2729 1.4955 11 6 -0.1847 -3.4023 1.9978 12 6 0.2173 -4.6573 1.5589 13 6 1.2090 -4.7852 0.6055 14 6 1.8097 -3.6538 0.0724 15 7 2.8020 -3.7755 -0.8894 16 7 3.1875 -5.0132 -1.3202 17 1 -0.4850 -0.8356 -0.0853 18 1 0.0742 -1.3017 1.8443 19 1 -0.9617 -3.3197 2.7434 20 1 -0.2498 -5.5416 1.9668 21 1 1.5138 -5.7662 0.2720 22 1 3.2222 -2.9818 -1.2560 23 1 2.3989 -5.5356 -1.6712 24 1 3.9138 -4.9435 -2.0171 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306706740.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:36 Heat of formation + Delta-G solvation = 19.300961 kcal Electronic energy + Delta-G solvation = -10196.942598 eV Core-core repulsion = 8302.476298 eV Total energy + Delta-G solvation = -1894.466300 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01111 -37.13878 -35.59483 -31.86830 -30.87908 -27.86503 -26.69951 -22.86716 -22.06909 -19.82054 -18.53564 -17.69355 -16.34887 -15.94692 -15.69789 -15.11662 -14.41841 -14.00472 -13.95784 -13.37889 -12.73874 -12.32335 -12.14112 -11.95827 -11.64777 -11.22730 -10.79234 -9.91317 -9.45736 -9.11435 -7.95128 -6.14960 0.97072 1.16337 1.52527 1.66345 1.80855 2.38280 2.52458 2.79533 3.66059 4.36202 4.46542 4.51268 4.87077 5.06816 5.18239 5.48606 5.66429 5.74682 5.88592 5.99915 6.13265 6.28457 6.46488 6.71605 7.00953 7.20253 7.68012 8.17512 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.044603 B = 0.016511 C = 0.012621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.615765 B = 1695.445628 C = 2218.061112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.002 3.998 3 Si 1.116 2.884 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.559 4.559 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.214 4.214 11 C -0.142 4.142 12 C -0.200 4.200 13 C -0.168 4.168 14 C 0.111 3.889 15 N -0.604 5.604 16 N -0.600 5.600 17 H 0.281 0.719 18 H 0.085 0.915 19 H 0.107 0.893 20 H 0.120 0.880 21 H 0.119 0.881 22 H 0.398 0.602 23 H 0.327 0.673 24 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -3.132 -2.560 5.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.212 4.212 3 Si 0.934 3.066 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.589 4.589 8 H 0.089 0.911 9 C 0.019 3.981 10 C -0.235 4.235 11 C -0.162 4.162 12 C -0.220 4.220 13 C -0.192 4.192 14 C 0.010 3.990 15 N -0.331 5.331 16 N -0.226 5.226 17 H 0.093 0.907 18 H 0.104 0.896 19 H 0.125 0.875 20 H 0.138 0.862 21 H 0.137 0.863 22 H 0.237 0.763 23 H 0.141 0.859 24 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.961 -1.800 -1.812 4.713 hybrid contribution -0.221 -1.201 -1.164 1.687 sum 3.740 -3.001 -2.977 5.644 Atomic orbital electron populations 1.70578 1.08989 1.32927 1.33200 1.28224 0.95692 1.07131 0.90183 0.83011 0.74647 0.70169 0.78789 1.20152 1.19369 1.18205 1.20274 1.02894 0.95200 1.40526 0.91110 1.17594 0.94947 0.91755 0.93847 1.20619 1.04076 0.97199 1.01620 1.20479 1.01147 0.93028 1.01532 1.20568 1.02044 0.96369 1.02994 1.20367 1.00872 0.96270 1.01677 1.17903 0.93821 0.93611 0.93646 1.42705 1.44153 1.02100 1.44149 1.60121 1.13366 1.03883 1.45233 0.90737 0.89643 0.87522 0.86192 0.86264 0.76347 0.85874 0.82455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.23 12.32 21.83 0.27 -45.96 14 2 C 0.00 0.10 4.94 85.24 0.42 0.52 14 3 Si 1.12 44.01 30.00 68.60 2.06 46.06 14 4 H -0.28 -10.86 7.11 99.48 0.71 -10.15 14 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 14 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 14 7 C -0.56 -29.87 8.43 23.37 0.20 -29.67 14 8 H 0.07 3.59 6.77 -2.91 -0.02 3.57 14 9 C 0.02 1.32 5.31 -21.17 -0.11 1.21 14 10 C -0.21 -11.53 7.89 22.46 0.18 -11.35 14 11 C -0.14 -6.78 9.96 22.01 0.22 -6.56 14 12 C -0.20 -8.88 10.04 22.41 0.22 -8.65 14 13 C -0.17 -7.56 9.34 22.37 0.21 -7.36 14 14 C 0.11 5.42 6.73 38.99 0.26 5.68 14 15 N -0.60 -24.74 6.55 -50.39 -0.33 -25.07 14 16 N -0.60 -18.99 9.58 37.02 0.35 -18.64 14 17 H 0.28 16.29 6.69 -92.71 -0.62 15.67 14 18 H 0.09 4.84 6.49 -2.91 -0.02 4.82 14 19 H 0.11 4.52 8.06 -2.91 -0.02 4.50 14 20 H 0.12 4.49 8.06 -2.91 -0.02 4.47 14 21 H 0.12 4.74 7.04 -2.91 -0.02 4.72 14 22 H 0.40 16.10 7.06 -215.49 -1.52 14.58 14 23 H 0.33 9.61 8.44 -210.56 -1.78 7.83 14 24 H 0.36 8.71 9.21 -210.55 -1.94 6.77 14 Total: -1.00 -61.08 210.23 0.11 -60.97 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -3.84 Total: 38.82 kcal Atomic # 6 Polarization: -57.78 SS G_CDS: 1.60 Total: -56.19 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: 0.29 Total: -89.67 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.06 Total: 46.06 kcal Total: -61.08 0.11 -60.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306706740.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.272 kcal (2) G-P(sol) polarization free energy of solvation -61.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds