Wall clock time and date at job start Mon Mar 30 2020 02:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.41256 * 126.49383 * 317.46742 * 3 2 1 5 5 N 1.30432 * 108.27407 * 180.23490 * 4 3 2 6 6 N 1.39906 * 109.23010 * 359.78039 * 5 4 3 7 7 H 0.96996 * 125.78659 * 180.02562 * 6 5 4 8 8 C 1.35148 * 108.42154 * 359.97438 * 6 5 4 9 9 N 1.37825 * 126.46805 * 179.97438 * 8 6 5 10 10 C 1.36812 * 119.99875 * 0.03001 * 9 8 6 11 11 H 1.07999 * 120.00127 * 359.97438 * 10 9 8 12 12 C 1.38795 * 120.00004 * 180.02562 * 10 9 8 13 13 N 1.31558 * 119.99850 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00104 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47317 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47211 * 119.99792 * 14 12 10 17 17 H 1.48507 * 109.47345 * 239.99555 * 14 12 10 18 18 H 1.08004 * 125.86789 * 0.02562 * 4 3 2 19 19 H 0.97004 * 119.99675 * 179.75265 * 9 8 6 20 20 H 0.97000 * 120.00207 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4085 -0.8358 0.7677 5 7 4.6473 -0.5313 0.4957 6 7 4.6715 0.4985 -0.4511 7 1 5.4680 0.9082 -0.8232 8 6 3.3969 0.8246 -0.7601 9 7 2.9927 1.7934 -1.6532 10 6 3.9248 2.5338 -2.3275 11 1 4.9773 2.3594 -2.1597 12 6 3.5178 3.5098 -3.2265 13 7 2.2356 3.7225 -3.4305 14 14 4.7904 4.5212 -4.1467 15 1 6.1525 4.0905 -3.7411 16 1 4.6213 4.3186 -5.6081 17 1 4.6091 5.9589 -3.8220 18 1 3.0816 -1.5947 1.4632 19 1 2.0473 1.9474 -1.8066 20 1 1.9511 4.4043 -4.0591 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307148531.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:50 Heat of formation + Delta-G solvation = 74.157629 kcal Electronic energy + Delta-G solvation = -9633.607152 eV Core-core repulsion = 7637.979273 eV Total energy + Delta-G solvation = -1995.627879 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.055 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.75804 -37.32436 -37.06676 -33.90227 -31.97931 -29.96143 -26.68180 -23.07969 -22.53905 -19.81988 -19.77254 -17.37214 -16.53428 -16.21443 -15.80366 -15.30001 -14.46354 -13.95132 -13.82420 -13.60673 -13.24152 -13.05892 -12.60040 -12.39980 -12.05044 -11.46198 -10.85741 -9.99766 -8.81696 -8.58404 -5.97749 1.06324 1.44543 1.50444 1.57435 1.59422 1.94426 2.00723 2.25507 2.83340 3.11761 3.28581 3.66222 4.38155 4.56283 4.93775 5.14248 5.53645 5.84497 6.43537 6.59897 6.92550 6.99570 7.32855 7.41152 8.58796 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.053786 B = 0.013076 C = 0.010558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.454760 B = 2140.732944 C = 2651.339902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.323 3.677 3 C -0.342 4.342 4 C 0.146 3.854 5 N -0.331 5.331 6 N -0.506 5.506 7 H 0.443 0.557 8 C 0.405 3.595 9 N -0.546 5.546 10 C -0.342 4.342 11 H 0.116 0.884 12 C -0.016 4.016 13 N -0.922 5.922 14 Si 1.004 2.996 15 H -0.249 1.249 16 H -0.281 1.281 17 H -0.281 1.281 18 H 0.219 0.781 19 H 0.407 0.593 20 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 -2.572 2.365 7.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C 0.013 3.987 3 C -0.366 4.366 4 C -0.047 4.047 5 N -0.150 5.150 6 N -0.227 5.227 7 H 0.289 0.711 8 C 0.161 3.839 9 N -0.160 5.160 10 C -0.471 4.471 11 H 0.134 0.866 12 C -0.218 4.218 13 N -0.560 5.560 14 Si 0.827 3.173 15 H -0.172 1.172 16 H -0.206 1.206 17 H -0.207 1.207 18 H 0.236 0.764 19 H 0.243 0.757 20 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.218 -2.564 2.371 7.132 hybrid contribution -0.332 1.175 -1.092 1.638 sum 5.886 -1.389 1.279 6.182 Atomic orbital electron populations 1.81141 1.12863 1.13059 1.13806 1.24805 0.91574 0.91240 0.91075 1.15145 0.84485 1.16389 1.20546 1.23897 0.88092 0.96565 0.96112 1.76869 1.20584 1.06927 1.10621 1.45440 1.04421 1.33861 1.38979 0.71128 1.18215 0.86692 0.89138 0.89863 1.40275 1.09578 1.30242 1.35875 1.19960 0.90439 1.15534 1.21157 0.86639 1.26229 0.98826 0.98588 0.98108 1.69779 1.16236 1.33929 1.36020 0.84686 0.78076 0.77235 0.77317 1.17179 1.20645 1.20664 0.76433 0.75725 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -23.22 18.54 19.00 0.35 -22.86 14 2 C 0.32 13.26 15.57 88.33 1.38 14.64 14 3 C -0.34 -13.00 6.01 -21.01 -0.13 -13.13 14 4 C 0.15 4.55 11.98 85.64 1.03 5.58 14 5 N -0.33 -11.08 12.61 -56.30 -0.71 -11.79 14 6 N -0.51 -17.95 7.15 -54.43 -0.39 -18.34 14 7 H 0.44 13.95 7.76 -213.45 -1.66 12.29 14 8 C 0.41 16.41 7.80 132.69 1.03 17.44 14 9 N -0.55 -25.01 5.40 -188.08 -1.02 -26.03 14 10 C -0.34 -15.65 9.81 84.05 0.82 -14.82 14 11 H 0.12 4.70 6.62 -2.91 -0.02 4.68 14 12 C -0.02 -0.75 5.50 84.87 0.47 -0.28 14 13 N -0.92 -47.60 13.05 21.64 0.28 -47.32 14 14 Si 1.00 36.90 29.55 68.60 2.03 38.93 14 15 H -0.25 -8.30 7.11 99.48 0.71 -7.60 14 16 H -0.28 -10.40 7.11 99.48 0.71 -9.69 14 17 H -0.28 -10.41 7.11 99.48 0.71 -9.70 14 18 H 0.22 4.74 8.06 -2.91 -0.02 4.72 14 19 H 0.41 20.26 7.74 -92.71 -0.72 19.55 14 20 H 0.28 13.65 8.31 -92.71 -0.77 12.87 14 Total: -1.00 -54.95 202.77 4.08 -50.87 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -1.07 Total: 27.12 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 4.60 Total: 9.43 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -1.48 Total: -126.35 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -54.95 4.08 -50.87 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307148531.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.029 kcal (2) G-P(sol) polarization free energy of solvation -54.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds