Wall clock time and date at job start Mon Mar 30 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33055 * 1 3 3 C 1.47312 * 119.99994 * 2 1 4 4 C 1.40582 * 120.79924 * 180.02562 * 3 2 1 5 5 C 1.36203 * 119.12137 * 180.02562 * 4 3 2 6 6 N 1.33673 * 120.79956 * 359.97438 * 5 4 3 7 7 C 1.34198 * 119.12252 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00296 * 329.47274 * 7 6 5 9 9 C 1.40093 * 119.99524 * 149.47077 * 7 6 5 10 10 N 1.30767 * 120.00327 * 342.37621 * 9 7 6 11 11 Si 1.86797 * 119.99556 * 162.37864 * 9 7 6 12 12 H 1.48495 * 109.47711 * 59.99970 * 11 9 7 13 13 H 1.48506 * 109.47116 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47056 * 299.99591 * 11 9 7 15 15 C 1.33676 * 121.75297 * 0.25843 * 6 5 4 16 16 C 1.36200 * 120.79814 * 359.48534 * 15 6 5 17 17 H 1.08004 * 119.99301 * 180.02562 * 1 2 3 18 18 H 1.07991 * 119.99948 * 359.97438 * 1 2 3 19 19 H 1.07999 * 120.00288 * 180.02562 * 2 1 3 20 20 H 1.08002 * 120.43962 * 359.97438 * 4 3 2 21 21 H 1.07996 * 119.59549 * 179.97438 * 5 4 3 22 22 H 0.96999 * 119.99974 * 180.02562 * 10 9 7 23 23 H 1.07997 * 119.60424 * 179.72053 * 15 6 5 24 24 H 1.08005 * 120.43730 * 180.23888 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3305 0.0000 0.0000 3 6 2.0671 1.2758 0.0000 4 6 3.4728 1.2954 -0.0005 5 6 4.1190 2.4944 0.0000 6 7 3.4329 3.6416 0.0005 7 6 4.1039 4.8038 0.0016 8 1 5.0715 4.8684 0.4771 9 6 3.5492 5.9333 -0.6142 10 7 2.5715 5.7967 -1.4717 11 14 4.2064 7.6346 -0.2102 12 1 5.6473 7.7053 -0.5623 13 1 3.4565 8.6527 -0.9890 14 1 4.0381 7.8984 1.2415 15 6 2.0963 3.6620 0.0057 16 6 1.3812 2.5029 0.0001 17 1 -0.5399 -0.9354 0.0004 18 1 -0.5399 0.9352 0.0004 19 1 1.8706 -0.9353 -0.0004 20 1 4.0329 0.3719 -0.0005 21 1 5.1987 2.5184 0.0000 22 1 2.1878 6.5788 -1.8983 23 1 1.5772 4.6091 0.0105 24 1 0.3014 2.5262 0.0004 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307158756.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:24 Heat of formation + Delta-G solvation = 121.254714 kcal Electronic energy + Delta-G solvation = -9767.751203 eV Core-core repulsion = 7956.787600 eV Total energy + Delta-G solvation = -1810.963603 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 176.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.76034 -37.63172 -35.38065 -32.73006 -32.60188 -28.25484 -25.40200 -25.04231 -21.42901 -21.13346 -18.58774 -17.70079 -17.05112 -16.74809 -16.20452 -15.85097 -15.00737 -14.59173 -14.10243 -13.56249 -13.43727 -13.13617 -12.62780 -12.39243 -12.26391 -12.07293 -11.36765 -10.52807 -10.01380 -9.49845 -7.33697 -0.63368 0.09020 1.10450 1.27603 1.48872 1.50787 1.83989 2.11743 2.23156 2.70683 3.69770 3.74582 3.85845 3.96650 4.13347 4.38484 4.46811 4.75511 4.79360 4.94400 5.03893 5.14469 5.23098 5.63347 5.70031 5.77655 6.13928 6.24641 7.43855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.132 4.132 3 C -0.079 4.079 4 C -0.085 4.085 5 C -0.018 4.018 6 N -0.146 5.146 7 C -0.334 4.334 8 H 0.170 0.830 9 C 0.037 3.963 10 N -0.782 5.782 11 Si 1.004 2.996 12 H -0.252 1.252 13 H -0.276 1.276 14 H -0.251 1.251 15 C 0.014 3.986 16 C -0.102 4.102 17 H 0.121 0.879 18 H 0.105 0.895 19 H 0.139 0.861 20 H 0.183 0.817 21 H 0.198 0.802 22 H 0.320 0.680 23 H 0.169 0.831 24 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 -4.823 2.376 5.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.087 4.087 4 C -0.104 4.104 5 C -0.153 4.153 6 N 0.207 4.793 7 C -0.469 4.469 8 H 0.187 0.813 9 C -0.186 4.186 10 N -0.405 5.405 11 Si 0.823 3.177 12 H -0.176 1.176 13 H -0.200 1.200 14 H -0.175 1.175 15 C -0.123 4.123 16 C -0.120 4.120 17 H 0.139 0.861 18 H 0.123 0.877 19 H 0.157 0.843 20 H 0.200 0.800 21 H 0.215 0.785 22 H 0.133 0.867 23 H 0.186 0.814 24 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.145 -4.589 2.186 5.085 hybrid contribution -0.045 0.843 -0.214 0.871 sum 0.100 -3.747 1.971 4.235 Atomic orbital electron populations 1.24796 0.95670 1.03439 0.96644 1.21826 0.95477 0.95250 1.02395 1.19819 0.93888 0.93973 1.00980 1.21706 0.93675 0.98622 0.96353 1.22647 1.00999 0.84541 1.07130 1.38456 1.06156 1.07948 1.26717 1.21480 1.06792 0.84876 1.33789 0.81251 1.26839 0.94866 1.05367 0.91560 1.69485 1.18848 1.37398 1.14783 0.84695 0.79856 0.72982 0.80174 1.17577 1.20031 1.17487 1.22179 0.83567 1.01899 1.04641 1.21603 1.02164 0.90348 0.97866 0.86125 0.87733 0.84288 0.80005 0.78467 0.86693 0.81369 0.81810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.83 14.19 66.66 0.95 1.77 14 2 C -0.13 0.55 9.94 23.50 0.23 0.78 14 3 C -0.08 0.13 5.92 -19.75 -0.12 0.01 14 4 C -0.09 0.36 9.84 22.37 0.22 0.58 14 5 C -0.02 0.03 10.15 83.94 0.85 0.89 14 6 N -0.15 -0.54 2.58 -354.63 -0.92 -1.45 14 7 C -0.33 -1.67 9.25 84.78 0.78 -0.89 14 8 H 0.17 0.05 7.91 -2.91 -0.02 0.03 14 9 C 0.04 0.27 4.93 85.30 0.42 0.69 14 10 N -0.78 -8.02 11.25 21.85 0.25 -7.77 14 11 Si 1.00 3.65 29.60 68.60 2.03 5.68 14 12 H -0.25 -1.04 7.11 99.48 0.71 -0.33 14 13 H -0.28 -1.66 7.11 99.48 0.71 -0.95 14 14 H -0.25 -1.01 7.11 99.48 0.71 -0.30 14 15 C 0.01 0.06 8.92 83.94 0.75 0.81 14 16 C -0.10 -0.03 9.41 22.37 0.21 0.18 14 17 H 0.12 -0.88 8.06 -2.91 -0.02 -0.90 14 18 H 0.10 -0.60 6.11 -2.91 -0.02 -0.62 14 19 H 0.14 -1.06 8.06 -2.91 -0.02 -1.09 14 20 H 0.18 -1.95 8.06 -2.91 -0.02 -1.97 14 21 H 0.20 -1.55 8.01 -2.91 -0.02 -1.57 14 22 H 0.32 2.79 8.29 -92.71 -0.77 2.02 14 23 H 0.17 0.98 6.18 -2.91 -0.02 0.96 14 24 H 0.16 -0.61 6.28 -2.91 -0.02 -0.62 14 Total: 0.00 -10.92 214.27 6.84 -4.08 By element: Atomic # 1 Polarization: -6.54 SS G_CDS: 1.18 Total: -5.36 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 4.30 Total: 4.81 kcal Atomic # 7 Polarization: -8.55 SS G_CDS: -0.67 Total: -9.22 kcal Atomic # 14 Polarization: 3.65 SS G_CDS: 2.03 Total: 5.68 kcal Total: -10.92 6.84 -4.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307158756.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.337 kcal (2) G-P(sol) polarization free energy of solvation -10.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds