Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86799 * 119.99540 * 2 1 4 4 H 1.48502 * 109.46976 * 239.99939 * 3 2 1 5 5 H 1.48504 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47244 * 120.00206 * 3 2 1 7 7 C 1.40395 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.41779 * 119.99707 * 0.02562 * 7 2 1 10 10 O 1.21721 * 120.00197 * 359.97438 * 9 7 2 11 11 C 1.48076 * 119.99854 * 179.97438 * 9 7 2 12 12 C 1.40248 * 121.15892 * 180.02562 * 11 9 7 13 13 C 1.38414 * 117.80788 * 179.97438 * 12 11 9 14 14 N 1.31966 * 119.98963 * 0.02562 * 13 12 11 15 15 N 1.28269 * 122.55386 * 359.97438 * 14 13 12 16 16 C 1.31887 * 122.33417 * 0.02562 * 15 14 13 17 17 H 0.96994 * 120.00362 * 0.02562 * 1 2 3 18 18 H 1.08000 * 121.09073 * 359.95932 * 12 11 9 19 19 H 1.07993 * 120.00348 * 179.97438 * 13 12 11 20 20 H 1.07999 * 120.18167 * 180.27581 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 3.0928 1.6965 -1.2125 5 1 1.2740 2.7465 -0.0006 6 1 3.0928 1.6965 1.2124 7 6 2.0072 -1.2158 0.0005 8 1 3.0872 -1.2157 0.0001 9 6 1.2984 -2.4437 0.0005 10 8 0.0811 -2.4437 0.0005 11 6 2.0388 -3.7260 0.0005 12 6 1.3623 -4.9546 0.0000 13 6 2.1233 -6.1107 -0.0005 14 7 3.4407 -6.0333 0.0000 15 7 4.0663 -4.9135 0.0005 16 6 3.4375 -3.7542 0.0011 17 1 -0.4850 0.8400 -0.0004 18 1 0.2832 -4.9970 0.0002 19 1 1.6391 -7.0760 -0.0005 20 1 3.9992 -2.8318 -0.0030 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307212767.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = 8.305221 kcal Electronic energy + Delta-G solvation = -9745.608679 eV Core-core repulsion = 7714.832474 eV Total energy + Delta-G solvation = -2030.776205 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.048 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.19452 -36.84292 -33.04021 -32.05182 -31.93527 -27.41288 -24.32367 -23.63747 -20.25855 -17.30264 -16.60869 -16.07945 -15.35557 -14.53975 -14.26698 -13.40223 -13.00147 -12.64926 -12.21777 -11.58252 -11.16681 -10.82722 -10.55971 -10.14554 -9.51211 -9.29758 -9.25618 -8.98662 -7.78194 -6.56913 -5.18828 1.28539 1.54529 2.95766 3.01936 3.03763 3.83963 3.87739 4.39995 4.72846 5.17340 5.29454 5.47165 5.56247 5.76784 5.96083 6.51328 6.69281 6.90691 6.99108 7.75056 8.49004 8.52713 9.28887 10.01913 10.23440 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.074883 B = 0.012727 C = 0.010920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.824973 B = 2199.437367 C = 2563.421313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.504 4.504 8 H 0.078 0.922 9 C 0.381 3.619 10 O -0.535 6.535 11 C -0.098 4.098 12 C -0.107 4.107 13 C 0.026 3.974 14 N -0.268 5.268 15 N -0.263 5.263 16 C 0.059 3.941 17 H 0.279 0.721 18 H 0.148 0.852 19 H 0.163 0.837 20 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -1.815 -0.003 3.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.535 4.535 8 H 0.097 0.903 9 C 0.277 3.723 10 O -0.424 6.424 11 C -0.111 4.111 12 C -0.136 4.136 13 C -0.137 4.137 14 N -0.111 5.111 15 N -0.105 5.105 16 C -0.106 4.106 17 H 0.091 0.909 18 H 0.166 0.834 19 H 0.180 0.820 20 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.592 -2.593 -0.004 4.430 hybrid contribution -0.933 1.491 -0.001 1.759 sum 2.659 -1.102 -0.004 2.878 Atomic orbital electron populations 1.69915 1.07706 1.28890 1.28864 1.26043 0.94759 1.01317 0.92677 0.86306 0.80067 0.79840 0.80175 1.18613 1.20047 1.18606 1.20938 0.95131 0.91361 1.46090 0.90347 1.18071 0.88561 0.85006 0.80692 1.90516 1.14653 1.87738 1.49455 1.23266 0.95519 0.99577 0.92710 1.22598 1.02612 0.92240 0.96171 1.24087 0.92439 0.99540 0.97670 1.72734 1.08689 1.19336 1.10303 1.72816 1.32443 0.95176 1.10042 1.24718 0.93237 0.98300 0.94333 0.90939 0.83414 0.81995 0.80714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.70 11.73 55.57 0.65 -19.05 14 2 C 0.08 1.94 5.50 -17.30 -0.10 1.85 14 3 Si 0.91 18.07 29.56 -169.99 -5.03 13.04 14 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 14 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 14 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 14 7 C -0.50 -12.96 8.89 -37.42 -0.33 -13.29 14 8 H 0.08 1.78 6.13 -52.49 -0.32 1.46 14 9 C 0.38 10.20 6.93 -34.19 -0.24 9.96 14 10 O -0.53 -16.09 15.04 5.17 0.08 -16.01 14 11 C -0.10 -2.22 5.93 -104.49 -0.62 -2.84 14 12 C -0.11 -2.13 9.78 -38.76 -0.38 -2.51 14 13 C 0.03 0.46 11.30 -17.43 -0.20 0.26 14 14 N -0.27 -5.30 11.48 30.52 0.35 -4.95 14 15 N -0.26 -5.45 11.49 30.81 0.35 -5.09 14 16 C 0.06 1.21 10.75 -16.91 -0.18 1.03 14 17 H 0.28 6.77 8.29 -40.82 -0.34 6.44 14 18 H 0.15 2.81 7.80 -52.49 -0.41 2.40 14 19 H 0.16 2.12 8.06 -52.49 -0.42 1.70 14 20 H 0.18 3.26 6.34 -52.49 -0.33 2.93 14 LS Contribution 196.32 15.07 2.96 2.96 Total: -1.00 -30.66 196.32 -3.29 -33.96 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -0.62 Total: 0.71 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.04 Total: -5.56 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 1.36 Total: -29.10 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.08 Total: -16.01 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -30.66 -3.29 -33.96 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307212767.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.263 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds