Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86799 * 119.99540 * 2 1 4 4 H 1.48502 * 109.46976 * 239.99939 * 3 2 1 5 5 H 1.48504 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47244 * 120.00206 * 3 2 1 7 7 C 1.40395 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.41779 * 119.99707 * 0.02562 * 7 2 1 10 10 O 1.21721 * 120.00197 * 359.97438 * 9 7 2 11 11 C 1.48076 * 119.99854 * 179.97438 * 9 7 2 12 12 C 1.40248 * 121.15892 * 180.02562 * 11 9 7 13 13 C 1.38414 * 117.80788 * 179.97438 * 12 11 9 14 14 N 1.31966 * 119.98963 * 0.02562 * 13 12 11 15 15 N 1.28269 * 122.55386 * 359.97438 * 14 13 12 16 16 C 1.31887 * 122.33417 * 0.02562 * 15 14 13 17 17 H 0.96994 * 120.00362 * 0.02562 * 1 2 3 18 18 H 1.08000 * 121.09073 * 359.95932 * 12 11 9 19 19 H 1.07993 * 120.00348 * 179.97438 * 13 12 11 20 20 H 1.07999 * 120.18167 * 180.27581 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 3.0928 1.6965 -1.2125 5 1 1.2740 2.7465 -0.0006 6 1 3.0928 1.6965 1.2124 7 6 2.0072 -1.2158 0.0005 8 1 3.0872 -1.2157 0.0001 9 6 1.2984 -2.4437 0.0005 10 8 0.0811 -2.4437 0.0005 11 6 2.0388 -3.7260 0.0005 12 6 1.3623 -4.9546 0.0000 13 6 2.1233 -6.1107 -0.0005 14 7 3.4407 -6.0333 0.0000 15 7 4.0663 -4.9135 0.0005 16 6 3.4375 -3.7542 0.0011 17 1 -0.4850 0.8400 -0.0004 18 1 0.2832 -4.9970 0.0002 19 1 1.6391 -7.0760 -0.0005 20 1 3.9992 -2.8318 -0.0030 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307212767.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = -13.272924 kcal Electronic energy + Delta-G solvation = -9746.544378 eV Core-core repulsion = 7714.832474 eV Total energy + Delta-G solvation = -2031.711904 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.048 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.79471 -38.82952 -34.96587 -33.78814 -33.51012 -29.35003 -26.03294 -25.23799 -22.10659 -19.12889 -18.24957 -17.80107 -17.05490 -16.15890 -15.88071 -15.03006 -14.92755 -14.25359 -14.22921 -13.36380 -12.76581 -12.66573 -12.11639 -11.76904 -11.09785 -11.02950 -10.89042 -10.78862 -9.78056 -8.47552 -7.22353 -0.39370 0.00753 1.39655 1.40489 1.55296 2.10895 2.18126 2.69373 3.24448 3.51757 3.64208 3.71370 3.94318 4.11017 4.50124 4.90779 5.10665 5.12348 5.32076 5.83154 6.56192 6.57641 7.71382 8.05479 8.34892 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.074883 B = 0.012727 C = 0.010920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.824973 B = 2199.437367 C = 2563.421313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.025 3.975 3 Si 0.997 3.003 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.528 4.528 8 H 0.103 0.897 9 C 0.360 3.640 10 O -0.585 6.585 11 C -0.128 4.128 12 C -0.104 4.104 13 C 0.046 3.954 14 N -0.276 5.276 15 N -0.272 5.272 16 C 0.065 3.935 17 H 0.287 0.713 18 H 0.152 0.848 19 H 0.214 0.786 20 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 -1.834 -0.004 4.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.196 4.196 3 Si 0.815 3.185 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.558 4.558 8 H 0.121 0.879 9 C 0.259 3.741 10 O -0.479 6.479 11 C -0.140 4.140 12 C -0.133 4.133 13 C -0.117 4.117 14 N -0.118 5.118 15 N -0.113 5.113 16 C -0.100 4.100 17 H 0.098 0.902 18 H 0.170 0.830 19 H 0.230 0.770 20 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.965 -2.635 -0.004 5.621 hybrid contribution -1.381 1.376 0.000 1.950 sum 3.583 -1.259 -0.005 3.798 Atomic orbital electron populations 1.70043 1.10013 1.30580 1.29787 1.27281 0.95527 1.05607 0.91186 0.85047 0.78524 0.74028 0.80867 1.17361 1.19412 1.17351 1.21502 0.96592 0.91834 1.45895 0.87893 1.18640 0.88317 0.87156 0.79939 1.90467 1.16548 1.88898 1.51981 1.22948 0.96436 0.98915 0.95740 1.22804 1.03103 0.92274 0.95142 1.24703 0.91293 1.00689 0.95054 1.72691 1.09805 1.19062 1.10225 1.72823 1.32754 0.95255 1.10496 1.24805 0.92365 0.98994 0.93806 0.90211 0.83034 0.76959 0.79337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.02 11.73 21.90 0.26 -42.77 14 2 C 0.02 1.24 5.50 85.41 0.47 1.71 14 3 Si 1.00 36.24 29.56 68.60 2.03 38.27 14 4 H -0.25 -8.56 7.11 99.48 0.71 -7.85 14 5 H -0.27 -9.43 7.11 99.48 0.71 -8.73 14 6 H -0.25 -8.55 7.11 99.48 0.71 -7.85 14 7 C -0.53 -27.25 8.89 23.67 0.21 -27.04 14 8 H 0.10 4.59 6.13 -2.91 -0.02 4.57 14 9 C 0.36 19.70 6.93 25.76 0.18 19.87 14 10 O -0.59 -36.56 15.04 -4.42 -0.07 -36.63 14 11 C -0.13 -5.77 5.93 -19.78 -0.12 -5.89 14 12 C -0.10 -4.02 9.78 22.80 0.22 -3.80 14 13 C 0.05 1.48 11.30 84.71 0.96 2.44 14 14 N -0.28 -10.21 11.48 -57.37 -0.66 -10.87 14 15 N -0.27 -10.77 11.49 -56.45 -0.65 -11.42 14 16 C 0.06 2.61 10.75 85.09 0.91 3.52 14 17 H 0.29 14.18 8.29 -92.71 -0.77 13.42 14 18 H 0.15 5.70 7.80 -2.91 -0.02 5.68 14 19 H 0.21 4.56 8.06 -2.91 -0.02 4.54 14 20 H 0.19 6.81 6.34 -2.91 -0.02 6.79 14 Total: -1.00 -67.05 196.32 5.02 -62.03 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.27 Total: 10.57 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 2.84 Total: -9.19 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -1.05 Total: -65.06 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.07 Total: -36.63 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Total: -67.05 5.02 -62.03 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307212767.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.756 kcal (2) G-P(sol) polarization free energy of solvation -67.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds