Wall clock time and date at job start Mon Mar 30 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39685 * 119.99856 * 2 1 4 4 C 1.39337 * 119.95014 * 359.97438 * 3 2 1 5 5 C 1.38475 * 120.42035 * 180.02562 * 4 3 2 6 6 C 1.37684 * 120.32918 * 359.97438 * 5 4 3 7 7 C 1.40751 * 119.89421 * 0.03199 * 6 5 4 8 8 C 1.41406 * 120.20989 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99858 * 24.36605 * 8 7 6 10 10 C 1.39935 * 119.99740 * 204.36617 * 8 7 6 11 11 N 1.30827 * 120.00201 * 17.83614 * 10 8 7 12 12 Si 1.86796 * 119.99610 * 197.83636 * 10 8 7 13 13 H 1.48497 * 109.47206 * 89.99987 * 12 10 8 14 14 H 1.48507 * 109.47251 * 209.99859 * 12 10 8 15 15 H 1.48501 * 109.47426 * 329.99960 * 12 10 8 16 16 C 1.38280 * 119.95177 * 179.97438 * 3 2 1 17 17 H 1.08998 * 109.47465 * 299.99520 * 1 2 3 18 18 H 1.09005 * 109.47161 * 59.99846 * 1 2 3 19 19 H 1.09004 * 109.46632 * 179.97438 * 1 2 3 20 20 H 0.96998 * 120.00141 * 180.02562 * 2 1 3 21 21 H 1.07997 * 119.78902 * 0.02562 * 4 3 2 22 22 H 1.08005 * 119.83675 * 179.97438 * 5 4 3 23 23 H 1.08001 * 120.05769 * 179.97438 * 6 5 4 24 24 H 0.97003 * 119.99955 * 179.97438 * 11 10 8 25 25 H 1.08002 * 120.15877 * 359.70841 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4657 2.4158 -0.0005 5 6 2.1482 3.6207 -0.0011 6 6 3.5249 3.6399 -0.0006 7 6 4.2434 2.4296 -0.0001 8 6 5.6574 2.4416 -0.0002 9 1 6.1901 3.2983 0.3854 10 6 6.3663 1.3434 -0.4998 11 7 5.7667 0.4740 -1.2718 12 14 8.1689 1.1190 -0.0643 13 1 8.2815 0.3117 1.1769 14 1 8.8630 0.4188 -1.1749 15 1 8.7953 2.4481 0.1511 16 6 3.5462 1.2086 0.0005 17 1 -0.3634 0.5137 0.8900 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 1.9501 -0.8400 -0.0004 21 1 0.3857 2.4109 -0.0005 22 1 1.5978 4.5500 -0.0019 23 1 4.0527 4.5822 -0.0014 24 1 6.2582 -0.2871 -1.6184 25 1 4.0881 0.2743 0.0057 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307249386.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:37 Heat of formation + Delta-G solvation = -3.639728 kcal Electronic energy + Delta-G solvation = -9947.718490 eV Core-core repulsion = 8117.683319 eV Total energy + Delta-G solvation = -1830.035172 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.57632 -36.45189 -35.01059 -31.35102 -30.34287 -27.14903 -26.13327 -22.88289 -21.68056 -19.05839 -17.77763 -16.62057 -16.47235 -15.84755 -14.87201 -14.67520 -14.39600 -14.07527 -13.41773 -13.00299 -12.75530 -12.70740 -12.44231 -12.07736 -11.53691 -11.31619 -11.08917 -10.52208 -9.26466 -8.62237 -7.92558 -6.32621 1.08075 1.32156 1.39171 1.52524 1.58987 2.23647 2.80470 2.96497 3.85631 4.47938 4.52225 4.75956 4.76658 4.95808 4.98996 5.20150 5.30342 5.44021 5.59332 5.95943 6.10226 6.20944 6.25408 6.57386 6.93311 7.04748 7.07561 7.24734 8.38533 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.057941 B = 0.013413 C = 0.011241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.132750 B = 2087.078691 C = 2490.359520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.766 5.766 3 C 0.211 3.789 4 C -0.304 4.304 5 C -0.063 4.063 6 C -0.286 4.286 7 C 0.106 3.894 8 C -0.505 4.505 9 H 0.073 0.927 10 C 0.036 3.964 11 N -0.823 5.823 12 Si 0.983 3.017 13 H -0.263 1.263 14 H -0.267 1.267 15 H -0.259 1.259 16 C -0.262 4.262 17 H 0.045 0.955 18 H 0.041 0.959 19 H 0.093 0.907 20 H 0.395 0.605 21 H 0.115 0.885 22 H 0.120 0.880 23 H 0.092 0.908 24 H 0.285 0.715 25 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 -2.457 1.683 4.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.398 5.398 3 C 0.110 3.890 4 C -0.327 4.327 5 C -0.082 4.082 6 C -0.307 4.307 7 C 0.103 3.897 8 C -0.534 4.534 9 H 0.091 0.909 10 C -0.179 4.179 11 N -0.449 5.449 12 Si 0.803 3.197 13 H -0.187 1.187 14 H -0.192 1.192 15 H -0.183 1.183 16 C -0.286 4.286 17 H 0.064 0.936 18 H 0.060 0.940 19 H 0.112 0.888 20 H 0.228 0.772 21 H 0.132 0.868 22 H 0.138 0.862 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.165 -2.607 1.531 5.147 hybrid contribution 0.966 -0.370 -0.020 1.034 sum -3.200 -2.977 1.511 4.624 Atomic orbital electron populations 1.21496 0.79484 1.02918 1.00330 1.44442 1.06057 1.04717 1.84539 1.17884 0.91051 0.86747 0.93313 1.20263 0.98183 0.91163 1.23091 1.20675 0.93633 0.97038 0.96814 1.21051 0.94385 0.96577 1.18684 1.17749 0.93754 0.91476 0.86684 1.19827 0.92036 1.03126 1.38445 0.90913 1.26756 1.05397 0.93977 0.91772 1.69928 1.40461 1.11446 1.23069 0.85207 0.76049 0.79484 0.78919 1.18737 1.19174 1.18299 1.20687 0.91277 0.98268 1.18356 0.93620 0.94015 0.88808 0.77240 0.86753 0.86163 0.89018 0.90402 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.91 9.94 127.77 1.27 4.18 15 2 N -0.77 -29.52 5.89 -360.95 -2.13 -31.65 15 3 C 0.21 10.20 6.64 38.16 0.25 10.46 15 4 C -0.30 -13.89 9.32 22.59 0.21 -13.68 15 5 C -0.06 -2.93 10.01 22.20 0.22 -2.71 15 6 C -0.29 -15.08 9.79 22.75 0.22 -14.86 15 7 C 0.11 6.12 5.57 -21.31 -0.12 6.00 15 8 C -0.50 -28.70 9.05 23.46 0.21 -28.48 15 9 H 0.07 4.00 7.91 -2.91 -0.02 3.98 15 10 C 0.04 1.87 5.14 85.25 0.44 2.31 15 11 N -0.82 -44.54 10.95 21.82 0.24 -44.31 15 12 Si 0.98 39.52 29.59 68.60 2.03 41.55 15 13 H -0.26 -10.22 7.11 99.48 0.71 -9.52 15 14 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 15 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 16 C -0.26 -14.45 8.53 22.86 0.19 -14.26 15 17 H 0.05 1.27 7.94 -2.39 -0.02 1.25 15 18 H 0.04 1.19 7.94 -2.38 -0.02 1.17 15 19 H 0.09 1.98 8.14 -2.38 -0.02 1.96 15 20 H 0.39 14.34 8.84 -92.71 -0.82 13.52 15 21 H 0.11 4.50 6.70 -2.91 -0.02 4.48 15 22 H 0.12 4.66 8.06 -2.91 -0.02 4.64 15 23 H 0.09 4.59 8.06 -2.91 -0.02 4.56 15 24 H 0.29 13.91 8.30 -92.71 -0.77 13.14 15 25 H 0.10 5.74 6.16 -2.91 -0.02 5.72 15 Total: -1.00 -62.83 219.80 3.42 -59.41 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.37 Total: 26.04 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 2.91 Total: -51.04 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.89 Total: -75.96 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -62.83 3.42 -59.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307249386.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.769 kcal (2) G-P(sol) polarization free energy of solvation -62.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds