Wall clock time and date at job start Mon Mar 30 2020 02:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48493 * 109.47567 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47010 * 300.00025 * 3 2 1 6 6 H 1.48510 * 109.46957 * 59.99545 * 3 2 1 7 7 C 1.38815 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61225 * 155.00127 * 10 9 7 12 12 C 1.53786 * 87.17350 * 139.93836 * 11 10 9 13 13 F 1.39898 * 113.61558 * 89.15642 * 12 11 10 14 14 F 1.39897 * 113.61259 * 220.06188 * 12 11 10 15 15 C 1.53782 * 113.61191 * 252.49800 * 10 9 7 16 16 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 17 17 H 0.96997 * 119.99530 * 0.02562 * 9 7 2 18 18 H 1.08996 * 112.85385 * 23.80101 * 10 9 7 19 19 H 1.09002 * 113.61445 * 254.52836 * 11 10 9 20 20 H 1.09002 * 113.61408 * 25.34566 * 11 10 9 21 21 H 1.08997 * 113.61668 * 334.56642 * 15 10 9 22 22 H 1.08998 * 113.61674 * 105.39151 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.2596 -4.8285 0.5970 12 6 1.8462 -5.6996 -0.5264 13 9 3.0651 -6.2993 -0.1922 14 9 0.9276 -6.6015 -1.0739 15 6 2.0001 -4.4027 -1.3419 16 1 -0.4850 0.8401 -0.0004 17 1 0.3555 -2.3880 -0.0002 18 1 3.0652 -3.5637 0.4077 19 1 1.5904 -5.1205 1.5938 20 1 0.1793 -4.6993 0.5305 21 1 1.1222 -4.1578 -1.9398 22 1 2.9281 -4.3498 -1.9111 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575468808.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:14 Heat of formation + Delta-G solvation = -90.994978 kcal Electronic energy + Delta-G solvation = -10449.773342 eV Core-core repulsion = 8061.720633 eV Total energy + Delta-G solvation = -2388.052709 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.066 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.76286 -48.11348 -39.03685 -35.25887 -31.98251 -27.06703 -26.42887 -23.93858 -21.09130 -19.26615 -18.56115 -17.47420 -17.08194 -16.52782 -15.75123 -15.21132 -14.99262 -14.69097 -14.40705 -13.51580 -13.42743 -13.10565 -12.71072 -12.65096 -12.17280 -11.97875 -11.70777 -11.32622 -10.98103 -9.10402 -7.98394 -5.29053 1.49814 1.50394 1.60412 2.50469 2.61538 2.92328 3.34102 3.41417 3.49870 3.97154 4.15670 4.52809 4.63887 4.66583 4.84132 4.90935 5.33018 5.51736 6.22633 7.30392 7.99978 8.24938 9.24687 Molecular weight = 177.07amu Principal moments of inertia in cm(-1) A = 0.099363 B = 0.010289 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.726503 B = 2720.684809 C = 2849.400898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.251 4.251 8 H 0.082 0.918 9 N -0.720 5.720 10 C 0.159 3.841 11 C -0.167 4.167 12 C 0.256 3.744 13 F -0.186 7.186 14 F -0.201 7.201 15 C -0.186 4.186 16 H 0.253 0.747 17 H 0.378 0.622 18 H 0.095 0.905 19 H 0.103 0.897 20 H 0.109 0.891 21 H 0.100 0.900 22 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 -8.783 -0.346 9.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.383 4.383 8 H 0.100 0.900 9 N -0.357 5.357 10 C 0.048 3.952 11 C -0.207 4.207 12 C 0.219 3.781 13 F -0.167 7.167 14 F -0.182 7.182 15 C -0.227 4.227 16 H 0.062 0.938 17 H 0.211 0.789 18 H 0.113 0.887 19 H 0.121 0.879 20 H 0.127 0.873 21 H 0.119 0.881 22 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.191 -8.668 -0.333 9.634 hybrid contribution -0.159 0.661 -0.136 0.694 sum 4.032 -8.007 -0.469 8.977 Atomic orbital electron populations 1.69811 1.06686 1.26268 1.58959 1.25580 0.96342 1.01191 1.03132 0.85072 0.78390 0.79678 0.76572 1.18815 1.22145 1.22098 1.19760 0.91810 0.84969 1.41750 0.89965 1.42458 1.05548 1.00550 1.87123 1.21578 0.96208 0.84307 0.93117 1.24489 1.03091 0.94341 0.98763 1.21962 0.75388 0.83015 0.97731 1.92969 1.44758 1.85843 1.93143 1.92958 1.66257 1.71855 1.87097 1.24944 1.04923 0.91607 1.01261 0.93840 0.78908 0.88723 0.87866 0.87262 0.88125 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.39 13.06 21.65 0.28 -57.11 14 2 C -0.07 -3.86 5.50 84.86 0.47 -3.40 14 3 Si 0.97 44.59 29.55 68.60 2.03 46.62 14 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 14 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 14 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 14 7 C -0.25 -13.34 9.97 84.03 0.84 -12.51 14 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 14 9 N -0.72 -34.42 5.40 -320.44 -1.73 -36.15 14 10 C 0.16 5.88 4.46 45.52 0.20 6.09 14 11 C -0.17 -5.17 7.61 31.12 0.24 -4.93 14 12 C 0.26 7.85 3.28 31.18 0.10 7.95 14 13 F -0.19 -5.72 17.39 44.97 0.78 -4.94 14 14 F -0.20 -6.37 17.41 44.97 0.78 -5.58 14 15 C -0.19 -6.10 7.67 31.18 0.24 -5.86 14 16 H 0.25 14.54 8.31 -92.71 -0.77 13.77 14 17 H 0.38 19.33 7.92 -92.71 -0.73 18.59 14 18 H 0.09 3.41 8.10 -2.39 -0.02 3.39 14 19 H 0.10 2.82 8.14 -2.39 -0.02 2.80 14 20 H 0.11 3.37 8.12 -2.39 -0.02 3.35 14 21 H 0.10 3.44 8.14 -2.39 -0.02 3.42 14 22 H 0.09 2.79 8.14 -2.39 -0.02 2.77 14 Total: -1.00 -58.55 207.33 4.73 -53.83 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.50 Total: 15.99 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 2.09 Total: -12.65 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -1.45 Total: -93.26 kcal Atomic # 9 Polarization: -12.09 SS G_CDS: 1.56 Total: -10.52 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -58.55 4.73 -53.83 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575468808.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.170 kcal (2) G-P(sol) polarization free energy of solvation -58.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds