Wall clock time and date at job start Mon Mar 30 2020 02:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48500 * 109.47137 * 239.99545 * 3 2 1 5 5 H 1.48502 * 109.46939 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47185 * 119.99451 * 3 2 1 7 7 C 1.38813 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99587 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00502 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00367 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47370 * 179.97438 * 10 9 7 12 12 H 1.09002 * 115.55911 * 330.69034 * 11 10 9 13 13 C 1.52997 * 117.49889 * 116.37606 * 11 10 9 14 14 C 1.53000 * 117.50223 * 185.00345 * 11 10 9 15 15 F 1.39894 * 117.49876 * 145.02275 * 14 11 10 16 16 F 1.39897 * 117.49410 * 359.97438 * 14 11 10 17 17 H 0.97000 * 120.00241 * 0.02562 * 1 2 3 18 18 H 0.97007 * 119.99927 * 359.97438 * 9 7 2 19 19 H 1.08999 * 109.46877 * 60.00414 * 10 9 7 20 20 H 1.08991 * 109.47398 * 300.00033 * 10 9 7 21 21 H 1.08999 * 117.49685 * 0.02562 * 13 11 10 22 22 H 1.08997 * 117.50044 * 214.98097 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.1067 -4.6199 0.4829 13 6 1.0627 -5.7488 -1.2144 14 6 1.6325 -6.2352 0.1196 15 9 0.8840 -7.1739 0.8378 16 9 3.0217 -6.3671 0.2185 17 1 -0.4850 0.8400 -0.0004 18 1 0.3556 -2.3881 0.0005 19 1 2.6847 -3.7145 0.8906 20 1 2.6847 -3.7146 -0.8893 21 1 1.7704 -5.5317 -2.0145 22 1 0.1048 -6.1602 -1.5325 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642870908.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:25 Heat of formation + Delta-G solvation = -81.178021 kcal Electronic energy + Delta-G solvation = -10208.779759 eV Core-core repulsion = 7821.152745 eV Total energy + Delta-G solvation = -2387.627014 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.066 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.66033 -48.34930 -38.20336 -35.76563 -32.81715 -27.98535 -24.76058 -23.47101 -22.04167 -19.32461 -18.78233 -17.41232 -16.88385 -16.59087 -15.51389 -15.23805 -15.09128 -14.91731 -14.59809 -14.15598 -13.88335 -13.04474 -12.78362 -12.45750 -12.15597 -11.89987 -11.80070 -10.97919 -10.82193 -9.05689 -7.97616 -5.28098 1.48600 1.51680 1.57898 2.03955 2.15994 2.56538 3.25150 3.37326 3.43420 3.64084 4.14425 4.32633 4.56541 4.66641 4.85541 4.94579 5.09969 5.47254 6.23787 7.31008 8.01992 8.27611 9.25474 Molecular weight = 177.07amu Principal moments of inertia in cm(-1) A = 0.098326 B = 0.009154 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.699369 B = 3058.179794 C = 3202.175628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.077 0.923 9 N -0.742 5.742 10 C 0.180 3.820 11 C -0.159 4.159 12 H 0.130 0.870 13 C -0.139 4.139 14 C 0.184 3.816 15 F -0.169 7.169 16 F -0.170 7.170 17 H 0.253 0.747 18 H 0.378 0.622 19 H 0.023 0.977 20 H 0.037 0.963 21 H 0.134 0.866 22 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -10.825 -1.985 11.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.094 0.906 9 N -0.386 5.386 10 C 0.054 3.946 11 C -0.179 4.179 12 H 0.148 0.852 13 C -0.177 4.177 14 C 0.147 3.853 15 F -0.149 7.149 16 F -0.150 7.150 17 H 0.062 0.938 18 H 0.210 0.790 19 H 0.041 0.959 20 H 0.055 0.945 21 H 0.152 0.848 22 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.485 -10.762 -1.957 11.218 hybrid contribution 0.067 0.743 0.360 0.829 sum 2.553 -10.019 -1.597 10.462 Atomic orbital electron populations 1.69802 1.06610 1.26409 1.58898 1.25598 0.96456 1.01182 1.03135 0.85172 0.77218 0.78849 0.78260 1.20172 1.21930 1.20438 1.19597 0.91627 0.85179 1.42199 0.90550 1.42466 1.05744 1.00721 1.89640 1.20262 0.92388 0.83363 0.98595 1.23824 1.02022 0.89429 1.02609 0.85238 1.24583 1.05222 0.97035 0.90817 1.20259 0.73667 0.90420 1.00939 1.92988 1.74847 1.67015 1.80073 1.92980 1.28644 1.96491 1.96933 0.93786 0.78990 0.95899 0.94540 0.84791 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.55 13.06 21.65 0.28 -58.26 14 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 14 3 Si 0.98 45.66 29.55 68.60 2.03 47.68 14 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 14 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 14 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 14 7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 14 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 14 9 N -0.74 -37.64 5.60 -343.47 -1.92 -39.56 14 10 C 0.18 7.22 6.18 86.38 0.53 7.76 14 11 C -0.16 -5.02 5.83 -10.79 -0.06 -5.08 14 12 H 0.13 4.10 8.04 -2.39 -0.02 4.08 14 13 C -0.14 -3.28 10.15 30.60 0.31 -2.97 14 14 C 0.18 5.25 5.20 30.60 0.16 5.41 14 15 F -0.17 -4.89 17.60 44.97 0.79 -4.10 14 16 F -0.17 -5.26 17.14 44.97 0.77 -4.49 14 17 H 0.25 14.85 8.31 -92.71 -0.77 14.08 14 18 H 0.38 20.00 7.60 -92.70 -0.70 19.30 14 19 H 0.02 0.96 8.14 -2.39 -0.02 0.94 14 20 H 0.04 1.42 7.88 -2.39 -0.02 1.40 14 21 H 0.13 2.86 8.03 -2.39 -0.02 2.84 14 22 H 0.15 2.64 8.14 -2.39 -0.02 2.62 14 Total: -1.00 -62.55 211.10 4.72 -57.82 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.53 Total: 12.77 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 2.25 Total: -11.86 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -1.64 Total: -97.83 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 1.56 Total: -8.59 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -62.55 4.72 -57.82 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642870908.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.355 kcal (2) G-P(sol) polarization free energy of solvation -62.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds