Wall clock time and date at job start Mon Mar 30 2020 02:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48491 * 109.47212 * 270.27390 * 3 2 1 5 5 H 1.48501 * 109.46722 * 30.27748 * 3 2 1 6 6 H 1.48502 * 109.47434 * 150.27290 * 3 2 1 7 7 C 1.40315 * 120.00398 * 180.27373 * 2 1 3 8 8 H 1.08000 * 119.99249 * 359.72614 * 7 2 1 9 9 C 1.40069 * 120.00015 * 179.72787 * 7 2 1 10 10 C 1.35034 * 119.99675 * 180.02562 * 9 7 2 11 11 C 1.50699 * 120.00179 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47427 * 124.99393 * 11 10 9 13 13 C 1.34510 * 125.78703 * 89.71675 * 12 11 10 14 14 C 1.41382 * 106.84204 * 179.89476 * 13 12 11 15 15 C 1.34515 * 106.84066 * 0.37022 * 14 13 12 16 16 O 1.34307 * 125.79097 * 270.02987 * 12 11 10 17 17 H 0.97000 * 120.00374 * 359.72784 * 1 2 3 18 18 H 1.07991 * 120.00464 * 359.97438 * 9 7 2 19 19 H 1.08005 * 120.00045 * 359.97438 * 10 9 7 20 20 H 1.08999 * 109.47399 * 244.99766 * 11 10 9 21 21 H 1.08997 * 109.46943 * 4.99573 * 11 10 9 22 22 H 1.07999 * 126.58109 * 0.02562 * 13 12 11 23 23 H 1.08004 * 126.58442 * 180.12495 * 14 13 12 24 24 H 1.07996 * 125.79753 * 179.79740 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4826 2.0498 -1.4000 5 1 1.4412 2.6509 0.7059 6 1 3.5413 1.4386 0.6942 7 6 2.0085 -1.2151 -0.0058 8 1 1.4685 -2.1504 -0.0058 9 6 3.4092 -1.2150 -0.0116 10 6 4.0844 -2.3844 -0.0177 11 6 5.5913 -2.3844 -0.0245 12 6 6.0990 -3.2023 1.1351 13 6 6.3560 -4.5224 1.1137 14 6 6.8121 -4.8719 2.4055 15 6 6.7987 -3.7460 3.1414 16 8 6.3659 -2.7378 2.3667 17 1 -0.4851 0.8400 0.0040 18 1 3.9492 -0.2798 -0.0120 19 1 3.5444 -3.3198 -0.0177 20 1 5.9505 -2.8163 -0.9586 21 1 5.9551 -1.3609 0.0661 22 1 6.2387 -5.1874 0.2708 23 1 7.1101 -5.8551 2.7388 24 1 7.0874 -3.6660 4.1789 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687677895.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:32 Heat of formation + Delta-G solvation = -10.239662 kcal Electronic energy + Delta-G solvation = -9657.300309 eV Core-core repulsion = 7729.260281 eV Total energy + Delta-G solvation = -1928.040028 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.32146 -36.51887 -34.81373 -33.70268 -31.81164 -28.39181 -25.17818 -22.54345 -21.43345 -20.32643 -19.60786 -18.00572 -16.89200 -16.62647 -15.35106 -15.05535 -14.53051 -14.25337 -13.62729 -13.60119 -13.30129 -13.11664 -12.51671 -12.04113 -11.94369 -11.53186 -11.33544 -10.74270 -9.96714 -9.20393 -8.84675 -6.43448 0.93971 1.20213 1.30577 1.46096 1.72726 1.86767 2.12927 2.32910 3.24816 4.09600 4.25670 4.31155 4.44037 4.69142 4.92666 4.97509 5.03810 5.12873 5.29535 5.44020 5.72282 5.82215 6.22928 6.33357 6.40592 6.81000 7.03949 8.25577 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.072069 B = 0.009201 C = 0.008927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.424596 B = 3042.255813 C = 3135.702733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.029 3.971 3 Si 0.976 3.024 4 H -0.248 1.248 5 H -0.262 1.262 6 H -0.247 1.247 7 C -0.487 4.487 8 H 0.033 0.967 9 C 0.007 3.993 10 C -0.399 4.399 11 C 0.031 3.969 12 C -0.006 4.006 13 C -0.244 4.244 14 C -0.221 4.221 15 C -0.064 4.064 16 O -0.201 6.201 17 H 0.294 0.706 18 H 0.090 0.910 19 H 0.058 0.942 20 H 0.093 0.907 21 H 0.069 0.931 22 H 0.152 0.848 23 H 0.172 0.828 24 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.935 -1.303 3.366 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.184 4.184 3 Si 0.795 3.205 4 H -0.172 1.172 5 H -0.186 1.186 6 H -0.171 1.171 7 C -0.517 4.517 8 H 0.051 0.949 9 C -0.013 4.013 10 C -0.420 4.420 11 C -0.006 4.006 12 C -0.056 4.056 13 C -0.263 4.263 14 C -0.240 4.240 15 C -0.130 4.130 16 O -0.098 6.098 17 H 0.105 0.895 18 H 0.107 0.893 19 H 0.076 0.924 20 H 0.111 0.889 21 H 0.087 0.913 22 H 0.170 0.830 23 H 0.190 0.810 24 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 11.609 -0.902 3.444 12.142 hybrid contribution -0.446 -0.096 0.003 0.456 sum 11.163 -0.998 3.447 11.725 Atomic orbital electron populations 1.69636 1.09553 1.31611 1.38150 1.27305 0.95846 1.05216 0.90053 0.85281 0.79428 0.75052 0.80763 1.17189 1.18649 1.17050 1.19573 0.92514 0.93663 1.45958 0.94896 1.20146 0.93171 0.95932 0.92025 1.21966 0.92862 0.95496 1.31722 1.18684 0.92959 0.97922 0.90990 1.23242 1.01436 0.95340 0.85542 1.21825 1.09212 0.94892 1.00400 1.22131 1.07254 1.00859 0.93715 1.24782 1.04173 0.85503 0.98570 1.84019 1.65527 1.39136 1.21078 0.89527 0.89264 0.92389 0.88894 0.91259 0.83031 0.81038 0.74704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.61 13.92 21.89 0.30 -48.31 14 2 C 0.03 1.56 5.52 85.37 0.47 2.03 14 3 Si 0.98 40.19 27.47 68.60 1.88 42.07 14 4 H -0.25 -9.53 7.11 99.48 0.71 -8.82 14 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 14 6 H -0.25 -9.84 6.36 99.48 0.63 -9.20 14 7 C -0.49 -28.81 9.64 23.22 0.22 -28.59 14 8 H 0.03 2.17 8.06 -2.91 -0.02 2.14 14 9 C 0.01 0.38 8.50 21.98 0.19 0.57 14 10 C -0.40 -19.85 9.26 24.95 0.23 -19.62 14 11 C 0.03 1.25 6.21 29.10 0.18 1.43 14 12 C -0.01 -0.21 6.56 24.83 0.16 -0.05 14 13 C -0.24 -8.40 10.81 22.19 0.24 -8.16 14 14 C -0.22 -6.37 10.91 22.19 0.24 -6.13 14 15 C -0.06 -1.84 12.09 66.97 0.81 -1.03 14 16 O -0.20 -7.59 10.65 -2.57 -0.03 -7.62 14 17 H 0.29 14.69 8.29 -92.71 -0.77 13.92 14 18 H 0.09 4.26 5.12 -2.92 -0.01 4.24 14 19 H 0.06 3.13 8.05 -2.91 -0.02 3.11 14 20 H 0.09 3.23 8.14 -2.39 -0.02 3.21 14 21 H 0.07 2.61 7.84 -2.39 -0.02 2.59 14 22 H 0.15 4.70 8.06 -2.91 -0.02 4.67 14 23 H 0.17 3.69 8.06 -2.91 -0.02 3.67 14 24 H 0.24 4.32 8.06 -2.91 -0.02 4.29 14 Total: -1.00 -64.92 221.79 6.02 -58.90 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.11 Total: 14.50 kcal Atomic # 6 Polarization: -62.30 SS G_CDS: 2.75 Total: -59.55 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.30 Total: -48.31 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.03 Total: -7.62 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.88 Total: 42.07 kcal Total: -64.92 6.02 -58.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687677895.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.665 kcal (2) G-P(sol) polarization free energy of solvation -64.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds