Wall clock time and date at job start Mon Mar 30 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47014 * 125.64902 * 359.68887 * 9 7 2 11 11 C 1.54316 * 107.27843 * 180.96750 * 10 9 7 12 12 H 1.09001 * 110.58942 * 140.78737 * 11 10 9 13 13 F 1.39902 * 110.92309 * 264.11535 * 11 10 9 14 14 C 1.55154 * 102.85989 * 22.52999 * 11 10 9 15 15 H 1.09000 * 111.00386 * 206.23195 * 14 11 10 16 16 F 1.39898 * 111.01125 * 82.37605 * 14 11 10 17 17 C 1.47428 * 125.64502 * 180.02562 * 9 7 2 18 18 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.88686 * 300.51466 * 10 9 7 20 20 H 1.09008 * 109.88186 * 61.67863 * 10 9 7 21 21 H 1.09001 * 110.36460 * 274.67081 * 17 9 7 22 22 H 1.08995 * 110.36948 * 36.99696 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0065 11 6 -0.4483 -4.0441 0.0289 12 1 -1.2982 -4.2510 0.6793 13 9 -0.6837 -4.5250 -1.2636 14 6 0.8522 -4.6556 0.6139 15 1 0.9840 -5.6851 0.2809 16 9 0.8589 -4.5778 2.0107 17 6 1.9336 -3.7311 0.0016 18 1 -0.4850 0.8401 0.0004 19 1 -0.5538 -2.0536 0.8925 20 1 -0.5580 -2.0831 -0.8930 21 1 2.1667 -4.0428 -1.0166 22 1 2.8331 -3.7399 0.6172 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714560572.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:47 Heat of formation + Delta-G solvation = -76.166684 kcal Electronic energy + Delta-G solvation = -10863.002421 eV Core-core repulsion = 8475.592715 eV Total energy + Delta-G solvation = -2387.409706 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.066 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.31008 -46.92869 -36.43633 -32.21574 -29.01651 -27.67701 -24.55904 -20.57292 -20.44510 -17.24439 -16.49213 -15.51919 -15.25166 -14.69699 -14.10796 -13.60745 -13.20292 -13.06971 -12.45969 -11.89749 -11.29491 -11.08633 -10.77410 -10.76078 -10.12628 -10.05588 -9.82743 -9.65920 -8.72523 -6.96709 -5.79248 -3.14023 3.38620 3.42958 3.45406 4.42613 4.56417 4.94248 5.03375 5.29561 5.37643 5.54098 5.70017 5.90676 6.18629 6.41498 6.70767 7.37550 7.40541 7.68145 8.12710 9.10680 9.71088 10.33290 11.33691 Molecular weight = 177.07amu Principal moments of inertia in cm(-1) A = 0.067057 B = 0.014878 C = 0.013683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.452323 B = 1881.556107 C = 2045.817202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.919 3.081 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.157 3.843 11 C 0.036 3.964 12 H 0.094 0.906 13 F -0.205 7.205 14 C 0.050 3.950 15 H 0.094 0.906 16 F -0.198 7.198 17 C 0.111 3.889 18 H 0.255 0.745 19 H 0.067 0.933 20 H 0.063 0.937 21 H 0.042 0.958 22 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -7.101 0.506 7.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.749 3.251 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.359 4.359 8 H 0.100 0.900 9 N -0.329 5.329 10 C 0.032 3.968 11 C -0.002 4.002 12 H 0.112 0.888 13 F -0.186 7.186 14 C 0.013 3.987 15 H 0.112 0.888 16 F -0.179 7.179 17 C -0.016 4.016 18 H 0.065 0.935 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.059 0.941 22 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.256 -6.862 0.496 6.885 hybrid contribution 0.352 0.808 0.029 0.882 sum 0.608 -6.055 0.525 6.108 Atomic orbital electron populations 1.69904 1.04999 1.25418 1.56849 1.24845 0.95816 0.97926 1.01815 0.86017 0.78526 0.82971 0.77621 1.21459 1.20576 1.21568 1.19074 0.90560 0.81958 1.44278 0.89994 1.44403 1.01025 0.99987 1.87532 1.21832 0.85614 0.86138 1.03240 1.23544 0.97548 0.99213 0.79877 0.88781 1.92768 1.95501 1.89738 1.40611 1.23236 0.98517 1.00625 0.76367 0.88827 1.92787 1.97315 1.97801 1.29962 1.22167 0.94729 0.86492 0.98224 0.93471 0.91494 0.91932 0.94057 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.25 10.31 55.49 0.57 -26.68 14 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 14 3 Si 0.92 22.16 29.55 -169.99 -5.02 17.13 14 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 14 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 14 7 C -0.23 -6.52 10.28 -15.06 -0.15 -6.67 14 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 14 9 N -0.60 -15.79 3.40 -170.09 -0.58 -16.37 14 10 C 0.16 3.90 5.19 -3.07 -0.02 3.88 14 11 C 0.04 0.70 4.56 -24.90 -0.11 0.59 14 12 H 0.09 1.62 8.14 -51.93 -0.42 1.20 14 13 F -0.21 -4.08 17.20 2.25 0.04 -4.04 14 14 C 0.05 0.93 4.66 -24.59 -0.11 0.81 14 15 H 0.09 1.40 8.14 -51.93 -0.42 0.98 14 16 F -0.20 -3.92 17.24 2.25 0.04 -3.88 14 17 C 0.11 2.34 7.04 -2.54 -0.02 2.32 14 18 H 0.25 7.26 8.31 -40.82 -0.34 6.92 14 19 H 0.07 1.80 7.40 -51.93 -0.38 1.42 14 20 H 0.06 1.71 7.47 -51.92 -0.39 1.32 14 21 H 0.04 0.84 8.14 -51.93 -0.42 0.42 14 22 H 0.06 1.17 8.14 -51.93 -0.42 0.74 14 LS Contribution 199.80 15.07 3.01 3.01 Total: -1.00 -30.24 199.80 -4.46 -34.70 By element: Atomic # 1 Polarization: -2.49 SS G_CDS: -2.01 Total: -4.49 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.51 Total: 0.62 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.01 Total: -43.05 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.08 Total: -7.92 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.01 Total: 3.01 kcal Total: -30.24 -4.46 -34.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714560572.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.463 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds