Wall clock time and date at job start Mon Mar 30 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99739 * 2 1 4 4 H 1.48496 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47612 * 59.99555 * 3 2 1 6 6 H 1.48496 * 109.47078 * 299.99394 * 3 2 1 7 7 C 1.38807 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00412 * 325.85909 * 7 2 1 9 9 N 1.36941 * 120.00071 * 145.85685 * 7 2 1 10 10 C 1.47024 * 125.64524 * 333.56465 * 9 7 2 11 11 C 1.54319 * 107.27151 * 180.96447 * 10 9 7 12 12 H 1.09004 * 110.92518 * 264.10734 * 11 10 9 13 13 F 1.39901 * 110.73929 * 140.85649 * 11 10 9 14 14 C 1.55155 * 102.86604 * 22.52638 * 11 10 9 15 15 H 1.09003 * 111.00499 * 82.37394 * 14 11 10 16 16 F 1.39897 * 111.00496 * 206.22674 * 14 11 10 17 17 C 1.47421 * 125.64974 * 153.86743 * 9 7 2 18 18 H 0.97009 * 119.99973 * 185.06707 * 1 2 3 19 19 H 1.08995 * 109.87864 * 300.51191 * 10 9 7 20 20 H 1.09004 * 109.87897 * 61.67777 * 10 9 7 21 21 H 1.09002 * 110.36844 * 274.67657 * 17 9 7 22 22 H 1.08998 * 110.36753 * 37.00034 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7100 1.3465 0.0006 5 1 1.8913 2.3966 1.2124 6 1 1.8914 2.3964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 1.6099 -2.0567 0.5259 9 7 3.2026 -1.3046 -0.6650 10 6 3.6103 -0.4946 -1.8223 11 6 5.0131 -0.9768 -2.2478 12 1 5.7897 -0.3501 -1.8092 13 9 5.1272 -1.0003 -3.6419 14 6 5.0749 -2.4144 -1.6676 15 1 4.5806 -3.1248 -2.3303 16 9 6.3971 -2.7989 -1.4201 17 6 4.2875 -2.2496 -0.3437 18 1 -0.4850 -0.8368 0.0742 19 1 2.9039 -0.6352 -2.6404 20 1 3.6514 0.5580 -1.5420 21 1 4.9323 -1.8373 0.4324 22 1 3.8748 -3.2072 -0.0261 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714560573.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:49 Heat of formation + Delta-G solvation = -76.390932 kcal Electronic energy + Delta-G solvation = -10790.983767 eV Core-core repulsion = 8403.564336 eV Total energy + Delta-G solvation = -2387.419430 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.066 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.74950 -47.02120 -37.09760 -32.55240 -29.33038 -28.08333 -23.97228 -21.11551 -20.64184 -17.81859 -17.00326 -16.13709 -15.01354 -14.77693 -14.50890 -13.96848 -13.78320 -13.16276 -13.04373 -12.34232 -11.95790 -11.42997 -10.94702 -10.61907 -10.58208 -10.16963 -9.69659 -9.40609 -8.41784 -7.28408 -6.46894 -3.43644 3.37580 3.44657 3.57355 4.34152 4.46513 4.56732 4.71659 4.88175 5.00773 5.21609 5.41144 5.74575 5.84596 6.22622 6.35103 6.54666 6.58671 7.66576 8.21939 8.84355 9.41803 10.11198 10.91754 Molecular weight = 177.07amu Principal moments of inertia in cm(-1) A = 0.059021 B = 0.016372 C = 0.014759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.296123 B = 1709.805818 C = 1896.723761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.000 4.000 3 Si 1.046 2.954 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.351 4.351 8 H 0.072 0.928 9 N -0.597 5.597 10 C 0.103 3.897 11 C 0.054 3.946 12 H 0.102 0.898 13 F -0.205 7.205 14 C 0.051 3.949 15 H 0.105 0.895 16 F -0.207 7.207 17 C 0.108 3.892 18 H 0.268 0.732 19 H 0.057 0.943 20 H 0.048 0.952 21 H 0.040 0.960 22 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 -1.735 -3.005 9.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.205 4.205 3 Si 0.877 3.123 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.478 4.478 8 H 0.090 0.910 9 N -0.325 5.325 10 C -0.023 4.023 11 C 0.017 3.983 12 H 0.120 0.880 13 F -0.186 7.186 14 C 0.013 3.987 15 H 0.123 0.877 16 F -0.188 7.188 17 C -0.018 4.018 18 H 0.079 0.921 19 H 0.075 0.925 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.862 -0.112 -3.038 9.368 hybrid contribution 0.328 -1.626 0.051 1.659 sum 9.190 -1.738 -2.987 9.818 Atomic orbital electron populations 1.70921 1.06354 1.30783 1.45055 1.26091 0.96129 1.01081 0.97235 0.84068 0.75370 0.75978 0.76928 1.20649 1.22021 1.21532 1.19777 0.94992 0.97631 1.35359 0.90989 1.44440 1.15400 1.41641 1.31046 1.22154 0.91298 0.96618 0.92211 1.23219 1.01277 0.97789 0.76042 0.87994 1.92795 1.97363 1.97516 1.30907 1.23451 0.78538 0.96022 1.00690 0.87730 1.92775 1.37774 1.92499 1.95731 1.22147 0.90889 0.96384 0.92376 0.92094 0.92530 0.93478 0.94254 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.70 55.49 0.76 -26.18 14 2 C 0.00 -0.01 5.29 -17.43 -0.09 -0.10 14 3 Si 1.05 25.39 26.22 -169.99 -4.46 20.94 14 4 H -0.28 -6.36 6.18 56.52 0.35 -6.01 14 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 14 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 14 7 C -0.35 -9.77 10.24 -15.06 -0.15 -9.93 14 8 H 0.07 2.11 8.06 -52.48 -0.42 1.69 14 9 N -0.60 -14.40 3.05 -170.07 -0.52 -14.92 14 10 C 0.10 2.22 5.86 -3.07 -0.02 2.21 14 11 C 0.05 0.97 4.57 -24.90 -0.11 0.86 14 12 H 0.10 1.67 8.14 -51.93 -0.42 1.24 14 13 F -0.21 -3.70 17.19 2.25 0.04 -3.66 14 14 C 0.05 0.89 4.66 -24.58 -0.11 0.77 14 15 H 0.10 1.73 8.14 -51.93 -0.42 1.30 14 16 F -0.21 -3.55 17.24 2.25 0.04 -3.51 14 17 C 0.11 2.16 7.05 -2.53 -0.02 2.14 14 18 H 0.27 7.98 8.73 -40.82 -0.36 7.63 14 19 H 0.06 1.26 8.11 -51.93 -0.42 0.84 14 20 H 0.05 1.04 3.86 -51.93 -0.20 0.84 14 21 H 0.04 0.78 8.14 -51.93 -0.42 0.35 14 22 H 0.06 1.20 8.14 -51.93 -0.42 0.78 14 LS Contribution 196.78 15.07 2.97 2.97 Total: -1.00 -29.22 196.78 -3.62 -32.84 By element: Atomic # 1 Polarization: -2.49 SS G_CDS: -1.94 Total: -4.43 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.51 Total: -4.05 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.24 Total: -41.10 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.08 Total: -7.16 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -4.46 Total: 20.94 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -29.22 -3.62 -32.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714560573.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.547 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds