Wall clock time and date at job start Mon Mar 30 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99739 * 2 1 4 4 H 1.48496 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47612 * 59.99555 * 3 2 1 6 6 H 1.48496 * 109.47078 * 299.99394 * 3 2 1 7 7 C 1.38807 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00412 * 325.85909 * 7 2 1 9 9 N 1.36941 * 120.00071 * 145.85685 * 7 2 1 10 10 C 1.47024 * 125.64524 * 333.56465 * 9 7 2 11 11 C 1.54319 * 107.27151 * 180.96447 * 10 9 7 12 12 H 1.09004 * 110.92518 * 264.10734 * 11 10 9 13 13 F 1.39901 * 110.73929 * 140.85649 * 11 10 9 14 14 C 1.55155 * 102.86604 * 22.52638 * 11 10 9 15 15 H 1.09003 * 111.00499 * 82.37394 * 14 11 10 16 16 F 1.39897 * 111.00496 * 206.22674 * 14 11 10 17 17 C 1.47421 * 125.64974 * 153.86743 * 9 7 2 18 18 H 0.97009 * 119.99973 * 185.06707 * 1 2 3 19 19 H 1.08995 * 109.87864 * 300.51191 * 10 9 7 20 20 H 1.09004 * 109.87897 * 61.67777 * 10 9 7 21 21 H 1.09002 * 110.36844 * 274.67657 * 17 9 7 22 22 H 1.08998 * 110.36753 * 37.00034 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7100 1.3465 0.0006 5 1 1.8913 2.3966 1.2124 6 1 1.8914 2.3964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 1.6099 -2.0567 0.5259 9 7 3.2026 -1.3046 -0.6650 10 6 3.6103 -0.4946 -1.8223 11 6 5.0131 -0.9768 -2.2478 12 1 5.7897 -0.3501 -1.8092 13 9 5.1272 -1.0003 -3.6419 14 6 5.0749 -2.4144 -1.6676 15 1 4.5806 -3.1248 -2.3303 16 9 6.3971 -2.7989 -1.4201 17 6 4.2875 -2.2496 -0.3437 18 1 -0.4850 -0.8368 0.0742 19 1 2.9039 -0.6352 -2.6404 20 1 3.6514 0.5580 -1.5420 21 1 4.9323 -1.8373 0.4324 22 1 3.8748 -3.2072 -0.0261 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714560573.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:49 Heat of formation + Delta-G solvation = -95.395445 kcal Electronic energy + Delta-G solvation = -10791.807864 eV Core-core repulsion = 8403.564336 eV Total energy + Delta-G solvation = -2388.243528 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.066 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.15497 -48.42103 -38.82876 -34.62549 -31.14673 -29.70040 -25.87968 -22.69785 -22.37808 -19.82227 -18.50214 -17.74138 -16.47988 -16.30448 -16.10914 -15.68586 -15.55686 -14.88041 -14.71764 -13.99686 -13.57952 -13.34957 -12.75254 -12.22163 -12.12978 -11.78285 -11.63210 -11.18136 -10.52082 -9.31760 -8.65855 -5.60338 1.43465 1.52720 1.69394 2.47824 2.75146 2.93257 3.11973 3.19764 3.37755 3.67466 3.89603 4.18500 4.36316 4.61439 4.71746 4.93909 5.03183 5.63199 6.05139 6.69215 7.34871 8.03214 8.69941 Molecular weight = 177.07amu Principal moments of inertia in cm(-1) A = 0.059021 B = 0.016372 C = 0.014759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.296123 B = 1709.805818 C = 1896.723761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.052 4.052 3 Si 1.087 2.913 4 H -0.253 1.253 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.346 4.346 8 H 0.042 0.958 9 N -0.616 5.616 10 C 0.094 3.906 11 C 0.066 3.934 12 H 0.130 0.870 13 F -0.203 7.203 14 C 0.066 3.934 15 H 0.117 0.883 16 F -0.200 7.200 17 C 0.105 3.895 18 H 0.255 0.745 19 H 0.043 0.957 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.274 -1.272 -3.520 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.250 4.250 3 Si 0.912 3.088 4 H -0.177 1.177 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.474 4.474 8 H 0.059 0.941 9 N -0.344 5.344 10 C -0.031 4.031 11 C 0.029 3.971 12 H 0.147 0.853 13 F -0.183 7.183 14 C 0.028 3.972 15 H 0.134 0.866 16 F -0.180 7.180 17 C -0.021 4.021 18 H 0.065 0.935 19 H 0.061 0.939 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.034 0.322 -3.562 11.599 hybrid contribution -0.337 -1.892 0.215 1.933 sum 10.697 -1.569 -3.347 11.318 Atomic orbital electron populations 1.71040 1.07503 1.30052 1.48177 1.27261 0.96080 1.04535 0.97167 0.83546 0.75722 0.72342 0.77202 1.17748 1.21806 1.20734 1.19639 0.96504 0.96616 1.34614 0.94052 1.44425 1.15541 1.42667 1.31786 1.22249 0.93347 0.96496 0.90970 1.23135 0.99538 0.98241 0.76193 0.85274 1.92809 1.97197 1.97520 1.30795 1.23228 0.78547 0.96262 0.99138 0.86561 1.92800 1.37179 1.92403 1.95637 1.22262 0.90168 0.95436 0.94192 0.93527 0.93852 0.93309 0.93155 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.70 21.65 0.30 -56.81 14 2 C -0.05 -2.95 5.29 84.86 0.45 -2.50 14 3 Si 1.09 50.22 26.22 68.60 1.80 52.02 14 4 H -0.25 -10.42 6.18 99.48 0.61 -9.81 14 5 H -0.29 -13.25 7.11 99.48 0.71 -12.55 14 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 14 7 C -0.35 -19.36 10.24 84.03 0.86 -18.50 14 8 H 0.04 2.51 8.06 -2.91 -0.02 2.49 14 9 N -0.62 -28.80 3.05 -691.99 -2.11 -30.92 14 10 C 0.09 3.87 5.86 86.73 0.51 4.38 14 11 C 0.07 2.13 4.57 31.78 0.15 2.27 14 12 H 0.13 3.57 8.14 -2.38 -0.02 3.55 14 13 F -0.20 -6.57 17.19 44.97 0.77 -5.80 14 14 C 0.07 2.07 4.66 31.99 0.15 2.22 14 15 H 0.12 3.45 8.14 -2.39 -0.02 3.43 14 16 F -0.20 -6.03 17.24 44.97 0.78 -5.25 14 17 C 0.10 3.93 7.05 86.86 0.61 4.55 14 18 H 0.26 15.76 8.73 -92.70 -0.81 14.95 14 19 H 0.04 1.88 8.11 -2.39 -0.02 1.86 14 20 H 0.05 2.01 3.86 -2.39 -0.01 2.00 14 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 14 22 H 0.06 2.35 8.14 -2.39 -0.02 2.34 14 Total: -1.00 -61.52 196.78 5.34 -56.17 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: 1.09 Total: -1.82 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 2.72 Total: -7.59 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -1.82 Total: -87.73 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 1.55 Total: -11.06 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.80 Total: 52.02 kcal Total: -61.52 5.34 -56.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714560573.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.225 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds