Wall clock time and date at job start Mon Mar 30 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40279 * 119.90985 * 103.50502 * 3 2 1 5 5 N 1.31433 * 120.11067 * 180.02562 * 4 3 2 6 6 C 1.34107 * 119.91427 * 359.97438 * 5 4 3 7 7 C 1.40915 * 120.08941 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00197 * 180.02562 * 7 6 5 9 9 C 1.40328 * 120.00073 * 359.71840 * 7 6 5 10 10 N 1.30574 * 119.99988 * 0.28182 * 9 7 6 11 11 Si 1.86803 * 120.00016 * 180.28003 * 9 7 6 12 12 H 1.48490 * 109.47019 * 60.00141 * 11 9 7 13 13 H 1.48504 * 109.47032 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00108 * 11 9 7 15 15 C 1.41108 * 119.81827 * 0.27675 * 6 5 4 16 16 N 1.31432 * 119.89414 * 359.47394 * 15 6 5 17 17 H 1.08005 * 119.94582 * 359.97438 * 4 3 2 18 18 H 0.97005 * 119.99970 * 179.97438 * 10 9 7 19 19 H 1.08002 * 120.05400 * 179.72785 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 0.2849 -1.1823 5 7 4.5817 0.2861 -1.1869 6 6 5.2547 0.0155 -0.0590 7 6 6.6638 0.0163 -0.0596 8 1 7.2044 -0.2023 0.8495 9 6 7.3648 0.2946 -1.2429 10 7 6.7113 0.5584 -2.3422 11 14 9.2328 0.2880 -1.2455 12 1 9.7235 -1.0552 -0.8454 13 1 9.7270 0.6104 -2.6083 14 1 9.7328 1.3041 -0.2849 15 6 4.5478 -0.2752 1.1272 16 7 3.2335 -0.2696 1.1247 17 1 2.7249 0.5024 -2.0906 18 1 7.1959 0.7512 -3.1601 19 1 5.0860 -0.4980 2.0367 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716252394.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:25 Heat of formation + Delta-G solvation = 61.436646 kcal Electronic energy + Delta-G solvation = -9106.171900 eV Core-core repulsion = 7202.729787 eV Total energy + Delta-G solvation = -1903.442113 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 175.044 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.14929 -35.60354 -34.32853 -32.30571 -30.62137 -26.89977 -23.09564 -22.71188 -18.45980 -17.70153 -16.31214 -15.30849 -14.35763 -13.64252 -13.54507 -12.78864 -12.14174 -12.02567 -11.83943 -11.61924 -11.48225 -11.05145 -10.62743 -10.05615 -9.81645 -9.43166 -8.11440 -7.76755 -6.87584 -5.08337 1.93544 2.75368 2.84331 2.85796 2.86572 3.57204 3.58440 3.87674 4.50592 4.92835 5.51447 5.66630 6.05945 6.11365 6.56090 6.69169 6.88508 7.21474 7.64249 8.00530 8.25347 8.43164 8.93135 9.51104 9.72894 Molecular weight = 175.04amu Principal moments of inertia in cm(-1) A = 0.115419 B = 0.011483 C = 0.010482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 242.535391 B = 2437.832904 C = 2670.522000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.311 3.689 3 C -0.083 4.083 4 C 0.153 3.847 5 N -0.462 5.462 6 C 0.198 3.802 7 C -0.367 4.367 8 H 0.100 0.900 9 C 0.056 3.944 10 N -0.682 5.682 11 Si 0.921 3.079 12 H -0.259 1.259 13 H -0.273 1.273 14 H -0.259 1.259 15 C -0.037 4.037 16 N -0.397 5.397 17 H 0.138 0.862 18 H 0.286 0.714 19 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.001 0.053 -0.304 6.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.002 4.002 3 C -0.219 4.219 4 C -0.023 4.023 5 N -0.177 5.177 6 C 0.075 3.925 7 C -0.398 4.398 8 H 0.118 0.882 9 C -0.175 4.175 10 N -0.301 5.301 11 Si 0.743 3.257 12 H -0.183 1.183 13 H -0.197 1.197 14 H -0.183 1.183 15 C -0.216 4.216 16 N -0.110 5.110 17 H 0.155 0.845 18 H 0.098 0.902 19 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.256 0.123 -0.584 4.298 hybrid contribution 1.211 0.008 -0.049 1.212 sum 5.467 0.131 -0.633 5.505 Atomic orbital electron populations 1.81064 1.12216 1.14337 1.09322 1.25296 0.91872 0.91137 0.91851 1.16609 0.85467 1.25727 0.94052 1.23398 0.92369 0.91168 0.95352 1.69634 1.04318 1.17379 1.26414 1.19551 0.94836 0.89801 0.88336 1.19987 0.90032 1.33099 0.96636 0.88165 1.26379 1.02277 0.93827 0.95003 1.69987 1.38587 1.21362 1.00129 0.86129 0.80083 0.80447 0.79015 1.18287 1.19708 1.18288 1.23189 0.89093 1.10187 0.99115 1.67571 1.09867 1.06748 1.26789 0.84462 0.90205 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.05 18.54 41.84 0.78 -10.28 13 2 C 0.31 6.96 15.55 -22.47 -0.35 6.61 13 3 C -0.08 -1.91 6.61 -84.47 -0.56 -2.46 13 4 C 0.15 3.47 10.93 -16.96 -0.19 3.28 13 5 N -0.46 -11.46 8.02 -10.64 -0.09 -11.55 13 6 C 0.20 4.77 6.55 -84.77 -0.56 4.22 13 7 C -0.37 -8.24 9.15 -37.78 -0.35 -8.59 13 8 H 0.10 1.98 7.85 -52.49 -0.41 1.57 13 9 C 0.06 1.19 5.50 -17.30 -0.10 1.10 13 10 N -0.68 -15.63 11.47 55.57 0.64 -15.00 13 11 Si 0.92 15.53 29.56 -169.99 -5.03 10.50 13 12 H -0.26 -4.31 7.11 56.52 0.40 -3.91 13 13 H -0.27 -4.54 7.11 56.52 0.40 -4.13 13 14 H -0.26 -4.31 7.11 56.52 0.40 -3.91 13 15 C -0.04 -0.84 10.98 -16.63 -0.18 -1.02 13 16 N -0.40 -9.39 10.41 -10.18 -0.11 -9.49 13 17 H 0.14 2.71 8.06 -52.48 -0.42 2.28 13 18 H 0.29 5.85 8.29 -40.82 -0.34 5.51 13 19 H 0.14 2.81 8.06 -52.49 -0.42 2.38 13 LS Contribution 196.83 15.07 2.97 2.97 Total: -1.00 -26.41 196.83 -3.50 -29.91 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -0.39 Total: -0.20 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.27 Total: 3.13 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 1.22 Total: -46.31 kcal Atomic # 14 Polarization: 15.53 SS G_CDS: -5.03 Total: 10.50 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -26.41 -3.50 -29.91 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716252394.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.344 kcal (2) G-P(sol) polarization free energy of solvation -26.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds