Wall clock time and date at job start Mon Mar 30 2020 02:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00079 * 2 1 4 4 H 1.48498 * 109.47277 * 239.99663 * 3 2 1 5 5 H 1.48492 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46909 * 119.99995 * 3 2 1 7 7 C 1.37878 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99918 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.86753 * 301.00313 * 9 7 2 11 11 C 1.54106 * 109.87948 * 179.97438 * 9 7 2 12 12 C 1.54807 * 104.18688 * 238.39256 * 11 9 7 13 13 F 1.39898 * 110.90484 * 97.31720 * 12 11 9 14 14 F 1.39897 * 110.90877 * 220.91978 * 12 11 9 15 15 C 1.54994 * 102.09494 * 339.12124 * 12 11 9 16 16 O 1.43739 * 110.00754 * 62.09107 * 9 7 2 17 17 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 18 18 H 1.08997 * 110.48714 * 357.06917 * 11 9 7 19 19 H 1.09000 * 110.48945 * 119.71789 * 11 9 7 20 20 H 1.08998 * 110.61564 * 278.52047 * 15 12 11 21 21 H 1.08994 * 110.75808 * 155.58946 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.6081 -2.5565 0.8767 11 6 2.2441 -3.6776 -0.0028 12 6 1.8870 -4.4735 -1.2817 13 9 2.7365 -4.1277 -2.3382 14 9 1.9284 -5.8508 -1.0404 15 6 0.4367 -4.0042 -1.5619 16 8 0.4581 -2.6082 -1.1956 17 1 -0.4850 0.8400 -0.0004 18 1 3.2696 -3.3122 -0.0546 19 1 2.1029 -4.2963 0.8834 20 1 -0.2711 -4.5534 -0.9410 21 1 0.1902 -4.1204 -2.6172 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885234491.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:02 Heat of formation + Delta-G solvation = -170.455531 kcal Electronic energy + Delta-G solvation = -10943.071062 eV Core-core repulsion = 8453.854022 eV Total energy + Delta-G solvation = -2489.217039 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.055 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -49.89121 -48.07632 -39.57341 -34.75457 -32.28430 -30.16286 -26.81716 -23.44783 -22.35758 -19.26837 -18.56862 -17.78697 -17.01104 -16.64271 -15.96069 -15.40484 -15.31791 -14.98587 -14.42123 -14.10482 -13.82303 -12.88701 -12.82982 -12.63956 -12.42093 -12.09728 -11.91341 -11.22145 -10.75485 -10.19430 -8.21214 -6.42960 1.42628 1.45438 1.53183 2.38815 2.61924 2.73363 3.12455 3.32119 3.49465 3.93669 4.29832 4.35030 4.56885 4.73837 4.77631 5.30371 5.65818 5.97957 6.31328 6.77990 7.33363 8.86958 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.079172 B = 0.013935 C = 0.013148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.576578 B = 2008.786057 C = 2129.052994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.562 4.562 8 H 0.069 0.931 9 C 0.197 3.803 10 H 0.020 0.980 11 C -0.173 4.173 12 C 0.250 3.750 13 F -0.200 7.200 14 F -0.193 7.193 15 C 0.009 3.991 16 O -0.375 6.375 17 H 0.266 0.734 18 H 0.093 0.907 19 H 0.112 0.888 20 H 0.097 0.903 21 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -6.347 -0.744 6.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.599 4.599 8 H 0.087 0.913 9 C 0.141 3.859 10 H 0.038 0.962 11 C -0.211 4.211 12 C 0.213 3.787 13 F -0.181 7.181 14 F -0.174 7.174 15 C -0.070 4.070 16 O -0.294 6.294 17 H 0.074 0.926 18 H 0.112 0.888 19 H 0.131 0.869 20 H 0.115 0.885 21 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.339 -6.096 -0.855 6.585 hybrid contribution 0.428 0.508 -0.052 0.666 sum 2.767 -5.588 -0.907 6.301 Atomic orbital electron populations 1.70132 1.07702 1.28001 1.47885 1.25975 0.95699 1.03296 0.92878 0.85510 0.78373 0.77945 0.79207 1.19675 1.20644 1.18593 1.21550 0.93246 0.91178 1.53903 0.91278 1.20301 0.87661 0.93118 0.84786 0.96199 1.23958 1.03415 0.97851 0.95918 1.22742 0.92703 0.76509 0.86717 1.92962 1.73458 1.91882 1.59777 1.92957 1.97239 1.32572 1.94621 1.24447 0.91875 0.86635 1.04034 1.89329 1.72962 1.20788 1.46346 0.92555 0.88821 0.86936 0.88513 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.27 12.95 21.45 0.28 -52.99 14 2 C 0.02 1.36 5.42 84.66 0.46 1.82 14 3 Si 0.97 43.18 29.54 68.60 2.03 45.21 14 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 14 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 14 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 14 7 C -0.56 -31.11 8.78 25.60 0.22 -30.89 14 8 H 0.07 3.66 7.33 -2.91 -0.02 3.64 14 9 C 0.20 9.95 3.24 30.22 0.10 10.05 14 10 H 0.02 1.08 8.14 -2.39 -0.02 1.06 14 11 C -0.17 -6.92 6.27 31.59 0.20 -6.73 14 12 C 0.25 9.45 2.73 31.89 0.09 9.54 14 13 F -0.20 -8.15 17.21 44.97 0.77 -7.38 14 14 F -0.19 -6.54 17.21 44.97 0.77 -5.76 14 15 C 0.01 0.33 7.33 72.66 0.53 0.86 14 16 O -0.37 -19.36 10.73 -148.98 -1.60 -20.95 14 17 H 0.27 14.79 8.31 -92.71 -0.77 14.02 14 18 H 0.09 3.74 7.38 -2.39 -0.02 3.72 14 19 H 0.11 3.80 8.12 -2.39 -0.02 3.78 14 20 H 0.10 3.21 8.14 -2.39 -0.02 3.19 14 21 H 0.11 3.85 8.14 -2.39 -0.02 3.83 14 Total: -1.00 -62.21 198.30 5.09 -57.13 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: 1.23 Total: 0.09 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 1.60 Total: -15.34 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.28 Total: -52.99 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.60 Total: -20.95 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 1.55 Total: -13.14 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -62.21 5.09 -57.13 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885234491.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.328 kcal (2) G-P(sol) polarization free energy of solvation -62.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds