Wall clock time and date at job start Mon Mar 30 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39899 * 109.47143 * 2 1 4 4 F 1.39892 * 109.47519 * 239.99857 * 2 1 3 5 5 C 1.53006 * 109.47149 * 119.99512 * 2 1 3 6 6 C 1.50697 * 115.55144 * 294.91262 * 5 2 1 7 7 H 1.08007 * 120.00026 * 91.91458 * 6 5 2 8 8 C 1.37872 * 120.00196 * 272.19344 * 6 5 2 9 9 N 1.31516 * 119.99658 * 5.34078 * 8 6 5 10 10 Si 1.86791 * 120.00385 * 185.34145 * 8 6 5 11 11 H 1.48503 * 109.47405 * 90.00045 * 10 8 6 12 12 H 1.48502 * 109.47347 * 209.99952 * 10 8 6 13 13 H 1.48498 * 109.47300 * 329.99772 * 10 8 6 14 14 C 1.53002 * 117.49238 * 80.57626 * 5 2 1 15 15 C 1.53001 * 117.49953 * 149.23505 * 5 2 1 16 16 H 1.09002 * 109.47660 * 297.04842 * 1 2 3 17 17 H 1.09006 * 109.47394 * 57.05020 * 1 2 3 18 18 H 1.09004 * 109.47291 * 177.04743 * 1 2 3 19 19 H 0.97003 * 120.00117 * 185.02149 * 9 8 6 20 20 H 1.09003 * 117.49707 * 215.00228 * 14 5 2 21 21 H 1.09000 * 117.50281 * 0.03190 * 14 5 2 22 22 H 1.09001 * 117.49453 * 359.97438 * 15 5 2 23 23 H 1.09003 * 117.49709 * 144.97672 * 15 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0400 -0.7212 1.2494 6 6 1.7167 -0.0550 2.5619 7 1 0.8162 -0.3216 3.0954 8 6 2.5674 0.8988 3.0788 9 7 3.6046 1.3035 2.3788 10 14 2.2470 1.6163 4.7734 11 1 2.9439 0.7975 5.7977 12 1 2.7552 3.0107 4.8248 13 1 0.7871 1.6113 5.0451 14 6 2.0659 -2.2507 1.2209 15 6 3.3749 -1.4610 1.1425 16 1 -0.3634 0.4673 0.9152 17 1 -0.3634 0.5590 -0.8624 18 1 -0.3634 -1.0263 -0.0529 19 1 4.2435 1.9196 2.7703 20 1 1.8492 -2.7751 2.1516 21 1 1.7201 -2.7432 0.3120 22 1 3.8896 -1.4344 0.1820 23 1 4.0196 -1.4656 2.0215 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772716883.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:05 Heat of formation + Delta-G solvation = -86.429875 kcal Electronic energy + Delta-G solvation = -10983.116889 eV Core-core repulsion = 8660.688048 eV Total energy + Delta-G solvation = -2322.428841 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 176.071 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.57240 -45.51094 -36.24448 -31.97196 -30.07817 -25.59907 -22.84093 -21.11238 -19.25036 -16.75735 -15.91856 -15.06211 -14.93480 -14.50522 -13.28898 -12.51614 -12.31344 -12.20132 -11.87046 -11.60311 -11.33750 -11.02471 -10.87487 -10.68623 -10.35992 -10.23599 -9.27719 -9.07047 -8.47463 -8.27326 -6.06941 -4.19429 3.27275 3.34856 3.36623 4.35406 5.02136 5.08632 5.20771 5.61657 5.75296 5.88737 6.28869 6.32103 6.51043 6.66334 6.73884 6.84032 7.05576 7.21302 7.45547 7.80016 8.26196 8.83087 9.49000 11.00313 Molecular weight = 176.07amu Principal moments of inertia in cm(-1) A = 0.054679 B = 0.019207 C = 0.017895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.960338 B = 1457.487431 C = 1564.345464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.309 3.691 3 F -0.188 7.188 4 F -0.230 7.230 5 C -0.004 4.004 6 C -0.505 4.505 7 H 0.065 0.935 8 C 0.077 3.923 9 N -0.856 5.856 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.272 1.272 14 C -0.196 4.196 15 C -0.144 4.144 16 H 0.091 0.909 17 H 0.056 0.944 18 H 0.071 0.929 19 H 0.262 0.738 20 H 0.084 0.916 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 -2.538 -1.877 4.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.273 3.727 3 F -0.168 7.168 4 F -0.211 7.211 5 C -0.005 4.005 6 C -0.542 4.542 7 H 0.083 0.917 8 C -0.129 4.129 9 N -0.490 5.490 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.197 1.197 14 C -0.233 4.233 15 C -0.182 4.182 16 H 0.110 0.890 17 H 0.075 0.925 18 H 0.090 0.910 19 H 0.072 0.928 20 H 0.103 0.897 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.421 -2.326 -1.939 4.569 hybrid contribution 0.075 0.512 0.744 0.906 sum -3.346 -1.815 -1.195 3.990 Atomic orbital electron populations 1.22522 0.93677 1.03314 1.03789 1.21002 0.92093 0.76801 0.82822 1.92977 1.90509 1.36728 1.96636 1.92845 1.91010 1.81767 1.55518 1.19634 0.98848 0.89032 0.92986 1.20200 1.09091 1.22004 1.02921 0.91688 1.25034 0.95433 0.95198 0.97242 1.70078 1.12410 1.31294 1.35185 0.86580 0.78718 0.78441 0.84236 1.20541 1.21120 1.19680 1.22998 1.04205 0.95471 1.00621 1.22526 0.90896 1.03922 1.00828 0.89020 0.92509 0.90983 0.92835 0.89714 0.91130 0.91231 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.45 9.29 37.15 0.35 -3.10 14 2 C 0.31 7.45 2.08 -26.73 -0.06 7.39 14 3 F -0.19 -5.08 16.13 2.25 0.04 -5.04 14 4 F -0.23 -5.39 15.64 2.25 0.04 -5.36 14 5 C 0.00 -0.10 1.19 -155.66 -0.18 -0.28 14 6 C -0.51 -13.56 7.99 -34.44 -0.28 -13.84 14 7 H 0.07 1.70 7.82 -52.48 -0.41 1.29 14 8 C 0.08 2.11 5.34 -17.82 -0.10 2.02 14 9 N -0.86 -24.52 12.07 55.43 0.67 -23.85 14 10 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 14 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 14 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 14 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 14 14 C -0.20 -4.29 9.70 -26.69 -0.26 -4.55 14 15 C -0.14 -3.52 8.98 -26.69 -0.24 -3.76 14 16 H 0.09 1.83 7.62 -51.93 -0.40 1.44 14 17 H 0.06 0.99 8.14 -51.93 -0.42 0.56 14 18 H 0.07 1.26 8.14 -51.93 -0.42 0.84 14 19 H 0.26 7.14 8.32 -40.82 -0.34 6.80 14 20 H 0.08 1.77 8.14 -51.93 -0.42 1.35 14 21 H 0.07 1.42 7.93 -51.93 -0.41 1.00 14 22 H 0.07 1.67 7.63 -51.93 -0.40 1.27 14 23 H 0.09 2.20 8.14 -51.93 -0.42 1.78 14 LS Contribution 211.15 15.07 3.18 3.18 Total: -1.00 -28.87 211.15 -4.30 -33.17 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -2.44 Total: -1.78 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -0.76 Total: -16.13 kcal Atomic # 7 Polarization: -24.52 SS G_CDS: 0.67 Total: -23.85 kcal Atomic # 9 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -28.87 -4.30 -33.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772716883.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.258 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds