Wall clock time and date at job start Mon Mar 30 2020 01:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38884 * 120.74876 * 2 1 4 4 C 1.38125 * 119.33863 * 180.23500 * 3 2 1 5 5 N 1.31895 * 120.86370 * 359.76544 * 4 3 2 6 6 C 1.32491 * 121.62471 * 359.97438 * 5 4 3 7 7 N 1.38829 * 119.71464 * 179.97438 * 6 5 4 8 8 C 1.36921 * 120.00291 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99333 * 0.02562 * 8 7 6 10 10 C 1.38815 * 120.00131 * 180.02562 * 8 7 6 11 11 N 1.31564 * 119.99768 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99724 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47382 * 60.00159 * 12 10 8 14 14 H 1.48503 * 109.46886 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47175 * 299.99547 * 12 10 8 16 16 C 1.38307 * 120.74148 * 179.74981 * 2 1 3 17 17 H 1.09003 * 109.46974 * 270.25295 * 1 2 3 18 18 H 1.09004 * 109.46971 * 30.24612 * 1 2 3 19 19 H 1.08999 * 109.47667 * 150.24483 * 1 2 3 20 20 H 1.07997 * 120.32819 * 359.97438 * 3 2 1 21 21 H 1.07994 * 119.56961 * 179.78896 * 4 3 2 22 22 H 0.96999 * 119.99908 * 359.97438 * 7 6 5 23 23 H 0.97004 * 119.99498 * 180.02562 * 11 10 8 24 24 H 1.08002 * 120.46019 * 0.02857 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5979 1.1596 -0.0049 5 7 4.2465 0.0111 -0.0050 6 6 3.6057 -1.1485 0.0001 7 7 4.3283 -2.3340 -0.0007 8 6 3.6722 -3.5357 0.0052 9 1 2.5925 -3.5613 0.0100 10 6 4.3947 -4.7210 0.0049 11 7 5.7100 -4.6896 -0.0005 12 14 3.4995 -6.3605 0.0121 13 1 2.6430 -6.4622 -1.1967 14 1 4.4911 -7.4659 0.0099 15 1 2.6528 -6.4568 1.2283 16 6 2.2140 -1.1887 0.0052 17 1 -0.3633 0.0045 1.0277 18 1 -0.3633 0.8878 -0.5177 19 1 -0.3634 -0.8921 -0.5100 20 1 1.6948 2.1389 -0.0004 21 1 4.1538 2.0855 -0.0084 22 1 5.2980 -2.3109 -0.0054 23 1 6.2148 -5.5179 -0.0010 24 1 1.6937 -2.1351 0.0089 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104604623.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:47 Heat of formation + Delta-G solvation = 10.653133 kcal Electronic energy + Delta-G solvation = -9927.181492 eV Core-core repulsion = 8032.340195 eV Total energy + Delta-G solvation = -1894.841298 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.73897 -37.11404 -34.53331 -33.62835 -30.07576 -28.38224 -26.79041 -23.57979 -22.21914 -19.70056 -18.01080 -17.13641 -16.39164 -16.03627 -15.24071 -15.12413 -14.93630 -13.84434 -13.57967 -13.24070 -13.14361 -12.98710 -12.45260 -12.12583 -11.99974 -11.96901 -10.62317 -10.10707 -10.03043 -8.75121 -8.49727 -5.80672 0.72830 0.82838 1.40979 1.50583 1.53349 2.25126 2.91487 3.18026 3.46833 4.01296 4.16761 4.53287 4.67933 4.76291 4.89301 4.95372 5.15460 5.25170 5.36588 5.42179 5.75933 5.88258 6.29527 6.72051 7.17784 7.44937 7.88323 8.69391 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.059824 B = 0.012062 C = 0.010093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.929224 B = 2320.806679 C = 2773.588999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.005 4.005 3 C -0.288 4.288 4 C 0.144 3.856 5 N -0.610 5.610 6 C 0.350 3.650 7 N -0.568 5.568 8 C -0.322 4.322 9 H 0.108 0.892 10 C -0.029 4.029 11 N -0.931 5.931 12 Si 1.006 2.994 13 H -0.263 1.263 14 H -0.280 1.280 15 H -0.263 1.263 16 C -0.284 4.284 17 H 0.083 0.917 18 H 0.088 0.912 19 H 0.066 0.934 20 H 0.151 0.849 21 H 0.172 0.828 22 H 0.389 0.611 23 H 0.276 0.724 24 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 5.670 0.038 10.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.013 4.013 3 C -0.313 4.313 4 C -0.017 4.017 5 N -0.333 5.333 6 C 0.109 3.891 7 N -0.177 5.177 8 C -0.451 4.451 9 H 0.126 0.874 10 C -0.229 4.229 11 N -0.570 5.570 12 Si 0.828 3.172 13 H -0.188 1.188 14 H -0.205 1.205 15 H -0.188 1.188 16 C -0.311 4.311 17 H 0.102 0.898 18 H 0.107 0.893 19 H 0.085 0.915 20 H 0.168 0.832 21 H 0.189 0.811 22 H 0.222 0.778 23 H 0.085 0.915 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.085 5.175 0.033 9.600 hybrid contribution -0.174 -0.885 0.009 0.902 sum -8.259 4.291 0.042 9.307 Atomic orbital electron populations 1.20800 0.88501 1.03601 1.03276 1.20384 0.97621 0.91980 0.91298 1.21629 0.94804 0.98555 1.16347 1.22738 0.92854 0.94482 0.91607 1.67107 1.42032 0.98236 1.25907 1.18772 0.89609 0.86249 0.94437 1.40814 1.07754 1.01964 1.67153 1.20007 0.93601 0.82625 1.48906 0.87417 1.26302 0.96346 1.03414 0.96788 1.69825 1.06820 1.30181 1.50148 0.84786 0.77495 0.75437 0.79468 1.18801 1.20498 1.18789 1.21153 0.92629 0.99309 1.18006 0.89830 0.89287 0.91508 0.83157 0.81145 0.77778 0.91472 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 10.06 71.24 0.72 -1.94 14 2 C -0.01 -0.19 5.91 -19.69 -0.12 -0.31 14 3 C -0.29 -9.58 9.82 22.40 0.22 -9.36 14 4 C 0.14 5.38 11.18 84.66 0.95 6.33 14 5 N -0.61 -28.93 10.39 -193.24 -2.01 -30.94 14 6 C 0.35 17.73 7.62 133.12 1.01 18.74 14 7 N -0.57 -31.53 5.44 -189.19 -1.03 -32.56 14 8 C -0.32 -17.61 9.54 84.04 0.80 -16.81 14 9 H 0.11 5.55 5.65 -2.91 -0.02 5.53 14 10 C -0.03 -1.57 5.50 84.87 0.47 -1.10 14 11 N -0.93 -53.01 13.05 21.65 0.28 -52.73 14 12 Si 1.01 41.53 29.55 68.60 2.03 43.56 14 13 H -0.26 -10.38 7.11 99.48 0.71 -9.68 14 14 H -0.28 -11.34 7.11 99.48 0.71 -10.64 14 15 H -0.26 -10.38 7.11 99.48 0.71 -9.67 14 16 C -0.28 -12.68 9.03 22.53 0.20 -12.48 14 17 H 0.08 1.87 8.14 -2.39 -0.02 1.86 14 18 H 0.09 1.78 8.10 -2.39 -0.02 1.76 14 19 H 0.07 1.65 8.10 -2.39 -0.02 1.63 14 20 H 0.15 3.75 8.06 -2.91 -0.02 3.73 14 21 H 0.17 4.94 8.06 -2.91 -0.02 4.92 14 22 H 0.39 22.76 8.01 -92.71 -0.74 22.02 14 23 H 0.28 14.74 8.31 -92.71 -0.77 13.97 14 24 H 0.12 5.19 5.94 -2.91 -0.02 5.17 14 Total: -1.00 -62.98 216.79 3.99 -58.99 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.47 Total: 30.61 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 4.25 Total: -16.94 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -2.76 Total: -116.22 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -62.98 3.99 -58.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104604623.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.643 kcal (2) G-P(sol) polarization free energy of solvation -62.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds