Wall clock time and date at job start Mon Mar 30 2020 01:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47128 * 2 1 4 4 N 1.32044 * 118.98123 * 90.00170 * 3 2 1 5 5 C 1.32428 * 121.29466 * 179.97438 * 4 3 2 6 6 C 1.38333 * 119.24888 * 359.97438 * 5 4 3 7 7 C 1.40902 * 118.15292 * 0.02562 * 6 5 4 8 8 C 1.41549 * 120.65843 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99732 * 353.79776 * 8 7 6 10 10 C 1.40107 * 120.00190 * 173.79212 * 8 7 6 11 11 N 1.30676 * 119.99991 * 6.23924 * 10 8 7 12 12 Si 1.86801 * 120.00231 * 186.22762 * 10 8 7 13 13 H 1.48502 * 109.46864 * 94.99030 * 12 10 8 14 14 H 1.48503 * 109.47384 * 214.98807 * 12 10 8 15 15 H 1.48495 * 109.47285 * 334.99354 * 12 10 8 16 16 N 1.31376 * 118.97395 * 269.97369 * 3 2 1 17 17 H 1.09005 * 109.46973 * 60.00152 * 1 2 3 18 18 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47209 * 300.00367 * 1 2 3 20 20 H 1.09000 * 109.47209 * 239.99633 * 2 1 3 21 21 H 1.09002 * 109.47209 * 119.99377 * 2 1 3 22 22 H 1.08002 * 120.37778 * 179.97438 * 5 4 3 23 23 H 1.07999 * 120.91778 * 180.02562 * 6 5 4 24 24 H 0.97003 * 120.00134 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2456 2.0241 1.1551 5 6 2.6872 3.2714 1.2085 6 6 2.9295 3.9537 0.0299 7 6 2.6926 3.2838 -1.1869 8 6 2.9222 3.9318 -2.4242 9 1 3.1857 4.9790 -2.4446 10 6 2.8078 3.2147 -3.6224 11 7 2.3715 1.9831 -3.6077 12 14 3.2786 4.0194 -5.2412 13 1 4.6818 3.6692 -5.5783 14 1 2.3756 3.5349 -6.3159 15 1 3.1528 5.4937 -5.1161 16 7 2.2450 2.0207 -1.1493 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8899 20 1 1.8933 -0.5139 -0.8899 21 1 1.8933 -0.5137 0.8901 22 1 2.8562 3.7506 2.1616 23 1 3.2903 4.9716 0.0420 24 1 2.2919 1.4867 -4.4373 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107287665.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:54 Heat of formation + Delta-G solvation = 25.449869 kcal Electronic energy + Delta-G solvation = -10141.347625 eV Core-core repulsion = 8247.147962 eV Total energy + Delta-G solvation = -1894.199663 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.88187 -34.16879 -32.94218 -31.24980 -29.32914 -26.32477 -23.61536 -22.05092 -20.26864 -17.60648 -15.87466 -14.92461 -14.42489 -13.77711 -13.27520 -13.13822 -12.70572 -12.40650 -11.48383 -11.24523 -11.16200 -10.97306 -10.60613 -10.30974 -10.17508 -9.72508 -8.92326 -8.56900 -7.92662 -7.39703 -6.46616 -4.76014 2.68323 2.89005 3.03777 3.07351 3.23774 3.87114 4.71979 5.40313 5.71679 5.76812 6.02707 6.20739 6.27958 6.44595 6.54260 6.74924 6.88370 6.91256 7.03286 7.17116 7.28897 7.90465 8.04996 8.51838 8.77854 9.09744 10.12971 10.25615 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.051224 B = 0.015044 C = 0.012039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.482996 B = 1860.793852 C = 2325.130461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.042 4.042 3 C 0.307 3.693 4 N -0.625 5.625 5 C 0.132 3.868 6 C -0.330 4.330 7 C 0.269 3.731 8 C -0.424 4.424 9 H 0.087 0.913 10 C 0.069 3.931 11 N -0.708 5.708 12 Si 0.911 3.089 13 H -0.268 1.268 14 H -0.275 1.275 15 H -0.260 1.260 16 N -0.512 5.512 17 H 0.056 0.944 18 H 0.049 0.951 19 H 0.049 0.951 20 H 0.076 0.924 21 H 0.066 0.934 22 H 0.126 0.874 23 H 0.105 0.895 24 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 -0.538 0.037 0.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C 0.036 3.964 4 N -0.348 5.348 5 C -0.027 4.027 6 C -0.357 4.357 7 C 0.140 3.860 8 C -0.457 4.457 9 H 0.105 0.895 10 C -0.158 4.158 11 N -0.329 5.329 12 Si 0.735 3.265 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.184 1.184 16 N -0.232 5.232 17 H 0.076 0.924 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.095 0.905 21 H 0.085 0.915 22 H 0.143 0.857 23 H 0.123 0.877 24 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.041 -1.621 -0.105 1.929 hybrid contribution 0.606 1.395 -0.683 1.667 sum -0.435 -0.226 -0.787 0.927 Atomic orbital electron populations 1.21594 0.95299 1.00508 1.01900 1.20024 0.95517 0.90819 1.01788 1.22764 0.92369 0.96078 0.85238 1.67920 1.24755 1.11537 1.30627 1.22233 0.93186 0.90656 0.96602 1.22395 1.16236 1.01951 0.95125 1.18788 0.86947 0.88061 0.92229 1.19664 1.39497 0.97348 0.89233 0.89490 1.26132 0.93630 0.94783 1.01207 1.70094 1.25974 1.08357 1.28495 0.86255 0.79231 0.80568 0.80459 1.19354 1.19964 1.18410 1.69191 1.17908 1.10257 1.25833 0.92449 0.93159 0.93212 0.90515 0.91523 0.85659 0.87659 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.89 37.16 0.37 -2.13 14 2 C -0.04 -0.89 6.36 -27.88 -0.18 -1.06 14 3 C 0.31 7.90 6.89 -157.33 -1.08 6.82 14 4 N -0.62 -15.83 10.31 -10.81 -0.11 -15.94 14 5 C 0.13 3.16 11.29 -17.26 -0.19 2.97 14 6 C -0.33 -8.34 9.95 -38.54 -0.38 -8.73 14 7 C 0.27 7.54 6.57 -84.62 -0.56 6.98 14 8 C -0.42 -11.35 9.19 -37.62 -0.35 -11.69 14 9 H 0.09 2.16 7.86 -52.49 -0.41 1.75 14 10 C 0.07 1.75 5.49 -17.34 -0.10 1.65 14 11 N -0.71 -18.64 11.55 55.55 0.64 -18.00 14 12 Si 0.91 18.28 29.56 -169.99 -5.03 13.25 14 13 H -0.27 -5.33 7.11 56.52 0.40 -4.93 14 14 H -0.27 -5.38 7.11 56.52 0.40 -4.97 14 15 H -0.26 -5.12 7.11 56.52 0.40 -4.71 14 16 N -0.51 -14.46 7.97 -8.68 -0.07 -14.52 14 17 H 0.06 1.15 8.14 -51.93 -0.42 0.73 14 18 H 0.05 0.76 8.14 -51.93 -0.42 0.33 14 19 H 0.05 0.92 8.14 -51.93 -0.42 0.50 14 20 H 0.08 1.61 8.14 -51.93 -0.42 1.19 14 21 H 0.07 1.28 8.14 -51.93 -0.42 0.86 14 22 H 0.13 2.51 8.06 -52.49 -0.42 2.09 14 23 H 0.11 2.40 8.06 -52.49 -0.42 1.98 14 24 H 0.28 6.51 8.29 -40.82 -0.34 6.17 14 LS Contribution 219.34 15.07 3.31 3.31 Total: -1.00 -29.89 219.34 -6.23 -36.12 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -2.51 Total: 0.97 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.47 Total: -5.19 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.46 Total: -48.47 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -29.89 -6.23 -36.12 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107287665.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.571 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds