Wall clock time and date at job start Mon Mar 30 2020 01:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47128 * 2 1 4 4 N 1.32044 * 118.98123 * 90.00170 * 3 2 1 5 5 C 1.32428 * 121.29466 * 179.97438 * 4 3 2 6 6 C 1.38333 * 119.24888 * 359.97438 * 5 4 3 7 7 C 1.40902 * 118.15292 * 0.02562 * 6 5 4 8 8 C 1.41549 * 120.65843 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99732 * 353.79776 * 8 7 6 10 10 C 1.40107 * 120.00190 * 173.79212 * 8 7 6 11 11 N 1.30676 * 119.99991 * 6.23924 * 10 8 7 12 12 Si 1.86801 * 120.00231 * 186.22762 * 10 8 7 13 13 H 1.48502 * 109.46864 * 94.99030 * 12 10 8 14 14 H 1.48503 * 109.47384 * 214.98807 * 12 10 8 15 15 H 1.48495 * 109.47285 * 334.99354 * 12 10 8 16 16 N 1.31376 * 118.97395 * 269.97369 * 3 2 1 17 17 H 1.09005 * 109.46973 * 60.00152 * 1 2 3 18 18 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47209 * 300.00367 * 1 2 3 20 20 H 1.09000 * 109.47209 * 239.99633 * 2 1 3 21 21 H 1.09002 * 109.47209 * 119.99377 * 2 1 3 22 22 H 1.08002 * 120.37778 * 179.97438 * 5 4 3 23 23 H 1.07999 * 120.91778 * 180.02562 * 6 5 4 24 24 H 0.97003 * 120.00134 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2456 2.0241 1.1551 5 6 2.6872 3.2714 1.2085 6 6 2.9295 3.9537 0.0299 7 6 2.6926 3.2838 -1.1869 8 6 2.9222 3.9318 -2.4242 9 1 3.1857 4.9790 -2.4446 10 6 2.8078 3.2147 -3.6224 11 7 2.3715 1.9831 -3.6077 12 14 3.2786 4.0194 -5.2412 13 1 4.6818 3.6692 -5.5783 14 1 2.3756 3.5349 -6.3159 15 1 3.1528 5.4937 -5.1161 16 7 2.2450 2.0207 -1.1493 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8899 20 1 1.8933 -0.5139 -0.8899 21 1 1.8933 -0.5137 0.8901 22 1 2.8562 3.7506 2.1616 23 1 3.2903 4.9716 0.0420 24 1 2.2919 1.4867 -4.4373 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107287665.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:54 Heat of formation + Delta-G solvation = 6.838151 kcal Electronic energy + Delta-G solvation = -10142.154690 eV Core-core repulsion = 8247.147962 eV Total energy + Delta-G solvation = -1895.006728 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.81919 -36.07304 -34.69025 -33.22329 -31.16536 -28.29537 -25.34612 -23.98848 -22.10238 -19.55799 -17.75919 -16.81795 -16.16218 -15.64826 -15.16358 -14.77220 -14.46995 -14.15288 -13.16750 -12.94735 -12.90328 -12.72451 -12.32912 -11.93591 -11.83568 -11.57927 -10.86768 -10.54351 -9.87822 -9.36929 -8.37439 -6.77652 0.76343 1.03015 1.39955 1.55077 1.55807 2.19019 2.81139 3.64914 3.80559 3.99118 4.39060 4.58467 4.62676 4.66260 4.84998 5.01586 5.09154 5.23386 5.28878 5.34135 5.41690 5.98960 6.07128 6.56976 6.78433 7.13324 8.20492 8.35099 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.051224 B = 0.015044 C = 0.012039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.482996 B = 1860.793852 C = 2325.130461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.041 4.041 3 C 0.289 3.711 4 N -0.633 5.633 5 C 0.130 3.870 6 C -0.347 4.347 7 C 0.229 3.771 8 C -0.451 4.451 9 H 0.096 0.904 10 C 0.023 3.977 11 N -0.744 5.744 12 Si 0.995 3.005 13 H -0.263 1.263 14 H -0.265 1.265 15 H -0.253 1.253 16 N -0.544 5.544 17 H 0.033 0.967 18 H 0.089 0.911 19 H 0.047 0.953 20 H 0.071 0.929 21 H 0.086 0.914 22 H 0.167 0.833 23 H 0.124 0.876 24 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 -0.353 -0.292 0.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C 0.018 3.982 4 N -0.357 5.357 5 C -0.028 4.028 6 C -0.374 4.374 7 C 0.101 3.899 8 C -0.485 4.485 9 H 0.114 0.886 10 C -0.201 4.201 11 N -0.365 5.365 12 Si 0.815 3.185 13 H -0.188 1.188 14 H -0.190 1.190 15 H -0.176 1.176 16 N -0.264 5.264 17 H 0.052 0.948 18 H 0.108 0.892 19 H 0.066 0.934 20 H 0.090 0.910 21 H 0.104 0.896 22 H 0.184 0.816 23 H 0.142 0.858 24 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.970 -1.437 -0.407 1.781 hybrid contribution 0.578 1.320 -0.508 1.528 sum -0.392 -0.117 -0.915 1.003 Atomic orbital electron populations 1.21511 0.93338 1.02718 1.00595 1.20151 0.97117 0.88342 1.02424 1.23621 0.91806 0.97812 0.84985 1.68045 1.25136 1.12190 1.30305 1.22880 0.91691 0.90299 0.97967 1.22620 1.16944 1.02950 0.94885 1.19372 0.87840 0.88830 0.93892 1.20103 1.40198 0.98124 0.90054 0.88553 1.27138 0.92920 0.95192 1.04816 1.70176 1.26327 1.09876 1.30156 0.85002 0.78957 0.79591 0.74990 1.18753 1.18960 1.17590 1.69207 1.19241 1.10837 1.27149 0.94768 0.89178 0.93365 0.91029 0.89565 0.81595 0.85833 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 9.89 71.98 0.71 -3.70 14 2 C -0.04 -1.70 6.36 29.85 0.19 -1.51 14 3 C 0.29 14.91 6.89 138.80 0.96 15.87 14 4 N -0.63 -31.64 10.31 -188.10 -1.94 -33.58 14 5 C 0.13 6.10 11.29 84.63 0.96 7.05 14 6 C -0.35 -17.54 9.95 22.94 0.23 -17.31 14 7 C 0.23 13.06 6.57 40.27 0.26 13.33 14 8 C -0.45 -24.41 9.19 23.54 0.22 -24.19 14 9 H 0.10 4.80 7.86 -2.91 -0.02 4.78 14 10 C 0.02 1.16 5.49 85.32 0.47 1.63 14 11 N -0.74 -39.55 11.55 21.85 0.25 -39.30 14 12 Si 1.00 36.98 29.56 68.60 2.03 39.01 14 13 H -0.26 -9.47 7.11 99.48 0.71 -8.76 14 14 H -0.27 -9.36 7.11 99.48 0.71 -8.65 14 15 H -0.25 -8.97 7.11 99.48 0.71 -8.26 14 16 N -0.54 -31.24 7.97 -181.38 -1.45 -32.68 14 17 H 0.03 1.35 8.14 -2.38 -0.02 1.33 14 18 H 0.09 2.48 8.14 -2.39 -0.02 2.46 14 19 H 0.05 1.71 8.14 -2.39 -0.02 1.69 14 20 H 0.07 2.99 8.14 -2.39 -0.02 2.97 14 21 H 0.09 3.18 8.14 -2.39 -0.02 3.16 14 22 H 0.17 6.23 8.06 -2.91 -0.02 6.21 14 23 H 0.12 5.57 8.06 -2.91 -0.02 5.55 14 24 H 0.28 13.49 8.29 -92.71 -0.77 12.72 14 Total: -1.00 -64.26 219.34 4.07 -60.19 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.19 Total: 15.20 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 3.99 Total: -8.84 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.13 Total: -105.56 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -64.26 4.07 -60.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107287665.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.028 kcal (2) G-P(sol) polarization free energy of solvation -64.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds