Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47269 * 2 1 4 4 C 1.39063 * 120.33977 * 269.97782 * 3 2 1 5 5 C 1.39034 * 118.70039 * 180.02562 * 4 3 2 6 6 C 1.37649 * 119.31264 * 359.97438 * 5 4 3 7 7 N 1.33483 * 120.63654 * 359.97438 * 6 5 4 8 8 C 1.34556 * 119.30351 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00348 * 329.73204 * 8 7 6 10 10 C 1.39989 * 120.00226 * 149.72636 * 8 7 6 11 11 N 1.30813 * 120.00016 * 342.32242 * 10 8 7 12 12 Si 1.86795 * 120.00089 * 162.31538 * 10 8 7 13 13 H 1.48507 * 109.46942 * 60.00392 * 12 10 8 14 14 H 1.48499 * 109.47341 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47428 * 300.00625 * 12 10 8 16 16 C 1.33515 * 121.39919 * 359.97438 * 7 6 5 17 17 H 1.08993 * 109.46841 * 180.02562 * 1 2 3 18 18 H 1.09003 * 109.46507 * 300.00159 * 1 2 3 19 19 H 1.09000 * 109.46812 * 59.99698 * 1 2 3 20 20 H 1.09000 * 109.47377 * 239.99599 * 2 1 3 21 21 H 1.09000 * 109.47132 * 119.99860 * 2 1 3 22 22 H 1.08001 * 120.65541 * 0.02562 * 4 3 2 23 23 H 1.08001 * 120.34507 * 180.02562 * 5 4 3 24 24 H 1.07998 * 119.68512 * 179.97438 * 6 5 4 25 25 H 0.97000 * 120.00492 * 179.97438 * 11 10 8 26 26 H 1.07997 * 119.68413 * 179.71900 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2670 2.0829 -1.2002 5 6 2.7308 3.3930 -1.1604 6 6 2.9435 3.9959 0.0586 7 7 2.7083 3.3353 1.1944 8 6 2.9259 3.9504 2.3712 9 1 3.6940 4.7053 2.4521 10 6 2.1566 3.6120 3.4907 11 7 1.0239 2.9757 3.3379 12 14 2.7476 4.0688 5.2028 13 1 2.8921 5.5437 5.2995 14 1 1.7597 3.6019 6.2085 15 1 4.0603 3.4248 5.4616 16 6 2.2617 2.0771 1.1877 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3632 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 1.8934 -0.5139 -0.8899 21 1 1.8934 -0.5138 0.8900 22 1 2.0924 1.5892 -2.1447 23 1 2.9215 3.9324 -2.0765 24 1 3.3040 5.0132 0.0965 25 1 0.4909 2.7409 4.1136 26 1 2.0851 1.5672 2.1232 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138108404.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = 89.254787 kcal Electronic energy + Delta-G solvation = -10376.269405 eV Core-core repulsion = 8536.606703 eV Total energy + Delta-G solvation = -1839.662702 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.73778 -37.45912 -35.56734 -33.66013 -31.03679 -28.56613 -25.67895 -25.04972 -22.75707 -21.05298 -18.36872 -17.78697 -17.25717 -16.66735 -16.19383 -15.54137 -14.97813 -14.79382 -14.09796 -13.96508 -13.43509 -13.25989 -12.89744 -12.78349 -12.32914 -12.11306 -11.87196 -11.66030 -11.04243 -10.19915 -9.47753 -7.41737 -0.30445 0.02731 1.20812 1.31800 1.47742 1.82256 2.04352 2.22016 2.57683 3.67495 3.76129 3.98425 4.04571 4.06626 4.33436 4.43038 4.50387 4.56450 4.88232 4.92021 5.02994 5.09883 5.17123 5.24596 5.34745 5.38466 5.73903 6.16724 6.26886 7.47060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.066 4.066 4 C -0.130 4.130 5 C -0.087 4.087 6 C -0.029 4.029 7 N -0.139 5.139 8 C -0.351 4.351 9 H 0.167 0.833 10 C 0.039 3.961 11 N -0.786 5.786 12 Si 1.001 2.999 13 H -0.253 1.253 14 H -0.275 1.275 15 H -0.252 1.252 16 C 0.010 3.990 17 H 0.071 0.929 18 H 0.042 0.958 19 H 0.059 0.941 20 H 0.100 0.900 21 H 0.077 0.923 22 H 0.165 0.835 23 H 0.185 0.815 24 H 0.194 0.806 25 H 0.318 0.682 26 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -1.037 -5.384 5.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.067 4.067 4 C -0.155 4.155 5 C -0.105 4.105 6 C -0.166 4.166 7 N 0.216 4.784 8 C -0.485 4.485 9 H 0.184 0.816 10 C -0.184 4.184 11 N -0.409 5.409 12 Si 0.821 3.179 13 H -0.176 1.176 14 H -0.200 1.200 15 H -0.175 1.175 16 C -0.129 4.129 17 H 0.090 0.910 18 H 0.061 0.939 19 H 0.078 0.922 20 H 0.118 0.882 21 H 0.096 0.904 22 H 0.183 0.817 23 H 0.203 0.797 24 H 0.211 0.789 25 H 0.131 0.869 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.983 -1.063 -5.150 5.620 hybrid contribution -0.183 0.188 0.963 0.998 sum 1.801 -0.874 -4.187 4.641 Atomic orbital electron populations 1.21736 0.94199 1.02624 1.01847 1.20564 0.96380 0.90137 1.04625 1.20431 0.96398 0.98171 0.91659 1.21988 0.99438 0.95232 0.98827 1.21887 0.95582 0.95122 0.97953 1.23059 1.07950 1.00507 0.85111 1.38392 1.24403 1.07574 1.08030 1.21400 1.20222 1.22372 0.84481 0.81602 1.26769 0.92838 0.93374 1.05401 1.69514 1.07923 1.25974 1.37517 0.84738 0.79461 0.80585 0.73159 1.17647 1.19976 1.17550 1.22431 1.04381 0.84702 1.01372 0.90963 0.93878 0.92205 0.88162 0.90425 0.81724 0.79740 0.78885 0.86941 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.26 9.90 71.98 0.71 0.97 15 2 C -0.08 0.25 6.08 29.85 0.18 0.44 15 3 C -0.07 0.01 5.14 -19.81 -0.10 -0.09 15 4 C -0.13 0.55 9.88 22.66 0.22 0.78 15 5 C -0.09 0.50 10.10 22.32 0.23 0.72 15 6 C -0.03 0.05 10.22 84.30 0.86 0.91 15 7 N -0.14 -0.61 2.58 -352.26 -0.91 -1.53 15 8 C -0.35 -2.21 9.28 84.70 0.79 -1.42 15 9 H 0.17 0.31 7.91 -2.91 -0.02 0.29 15 10 C 0.04 0.33 4.94 85.27 0.42 0.75 15 11 N -0.79 -8.85 11.24 21.83 0.25 -8.61 15 12 Si 1.00 4.73 29.59 68.60 2.03 6.76 15 13 H -0.25 -1.31 7.11 99.48 0.71 -0.60 15 14 H -0.28 -1.90 7.11 99.48 0.71 -1.20 15 15 H -0.25 -1.28 7.11 99.48 0.71 -0.57 15 16 C 0.01 0.05 8.66 84.29 0.73 0.78 15 17 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 15 18 H 0.04 0.11 8.14 -2.39 -0.02 0.09 15 19 H 0.06 -0.14 8.14 -2.39 -0.02 -0.15 15 20 H 0.10 -0.70 8.09 -2.39 -0.02 -0.72 15 21 H 0.08 -0.23 8.09 -2.39 -0.02 -0.25 15 22 H 0.17 -1.56 8.06 -2.91 -0.02 -1.58 15 23 H 0.19 -2.33 8.06 -2.91 -0.02 -2.35 15 24 H 0.19 -1.36 8.01 -2.91 -0.02 -1.39 15 25 H 0.32 3.10 8.30 -92.71 -0.77 2.33 15 26 H 0.16 1.22 6.18 -2.91 -0.02 1.20 15 Total: 0.00 -11.26 226.06 6.55 -4.71 By element: Atomic # 1 Polarization: -6.32 SS G_CDS: 1.14 Total: -5.17 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 4.04 Total: 3.84 kcal Atomic # 7 Polarization: -9.47 SS G_CDS: -0.67 Total: -10.13 kcal Atomic # 14 Polarization: 4.73 SS G_CDS: 2.03 Total: 6.76 kcal Total: -11.26 6.55 -4.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138108404.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.967 kcal (2) G-P(sol) polarization free energy of solvation -11.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds