Wall clock time and date at job start Mon Mar 30 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39071 * 120.64946 * 2 1 4 4 C 1.37611 * 119.31395 * 179.97438 * 3 2 1 5 5 N 1.33510 * 120.64134 * 359.97438 * 4 3 2 6 6 C 1.34549 * 119.30451 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00405 * 212.22455 * 6 5 4 8 8 C 1.39989 * 120.00335 * 32.22519 * 6 5 4 9 9 N 1.30809 * 120.00277 * 194.08027 * 8 6 5 10 10 Si 1.86804 * 119.99520 * 14.07316 * 8 6 5 11 11 H 1.48495 * 109.47431 * 266.80751 * 10 8 6 12 12 H 1.48495 * 109.47050 * 26.81237 * 10 8 6 13 13 H 1.48504 * 109.46754 * 146.80778 * 10 8 6 14 14 C 1.33481 * 121.39276 * 0.25658 * 5 4 3 15 15 C 1.50698 * 119.68202 * 179.74639 * 14 5 4 16 16 C 1.37657 * 120.63820 * 359.48682 * 14 5 4 17 17 H 1.09005 * 109.46938 * 90.00042 * 1 2 3 18 18 H 1.09004 * 109.47600 * 209.99605 * 1 2 3 19 19 H 1.08997 * 109.47394 * 330.00639 * 1 2 3 20 20 H 1.08004 * 120.33908 * 0.02562 * 3 2 1 21 21 H 1.08004 * 119.67863 * 179.97438 * 4 3 2 22 22 H 0.96995 * 119.99998 * 179.97438 * 9 8 6 23 23 H 1.08998 * 109.47567 * 84.32214 * 15 14 5 24 24 H 1.09001 * 109.47210 * 204.32775 * 15 14 5 25 25 H 1.09003 * 109.47115 * 324.32095 * 15 14 5 26 26 H 1.08005 * 120.34619 * 180.23263 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2159 1.1964 0.0000 4 6 3.5916 1.1644 0.0005 5 7 4.2451 0.0001 0.0016 6 6 5.5906 0.0002 0.0015 7 1 6.1307 -0.7915 -0.4965 8 6 6.2906 1.0263 0.6471 9 7 7.5692 1.1875 0.4228 10 14 5.3986 2.1656 1.8286 11 1 4.9343 3.3719 1.0976 12 1 4.2294 1.4586 2.4101 13 1 6.3232 2.5718 2.9174 14 6 3.5919 -1.1639 -0.0030 15 6 4.3684 -2.4554 -0.0074 16 6 2.2157 -1.1961 0.0017 17 1 -0.3633 0.0000 -1.0277 18 1 -0.3634 -0.8900 0.5138 19 1 -0.3634 0.8900 0.5137 20 1 1.6921 2.1409 0.0004 21 1 4.1481 2.0900 0.0001 22 1 8.0541 1.8987 0.8698 23 1 4.6424 -2.7182 1.0143 24 1 3.7533 -3.2478 -0.4340 25 1 5.2713 -2.3344 -0.6060 26 1 1.6919 -2.1406 0.0017 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196463880.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:08 Heat of formation + Delta-G solvation = 93.095308 kcal Electronic energy + Delta-G solvation = -10488.384808 eV Core-core repulsion = 8648.888643 eV Total energy + Delta-G solvation = -1839.496165 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.14408 -37.41697 -35.29662 -34.29198 -30.88635 -28.87805 -27.19315 -25.32895 -22.62483 -20.89804 -18.75233 -18.31165 -16.95263 -16.93449 -16.16056 -15.27414 -14.97072 -14.73747 -14.44935 -13.94421 -13.87681 -13.63552 -13.32867 -13.02224 -12.63474 -12.41308 -12.11054 -11.58339 -10.97902 -10.34166 -9.37315 -7.30001 -0.53138 -0.24296 1.14081 1.25238 1.39430 1.66647 1.83052 1.93418 2.48714 3.41224 3.46714 3.53805 3.70606 3.85234 4.20541 4.31023 4.47869 4.50771 4.52453 4.55726 4.75510 4.81781 4.93014 5.07046 5.15271 5.34571 5.57335 6.02507 6.12582 7.58435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C -0.076 4.076 4 C -0.060 4.060 5 N -0.142 5.142 6 C -0.282 4.282 7 H 0.167 0.833 8 C 0.056 3.944 9 N -0.701 5.701 10 Si 0.901 3.099 11 H -0.244 1.244 12 H -0.240 1.240 13 H -0.251 1.251 14 C 0.007 3.993 15 C -0.107 4.107 16 C -0.075 4.075 17 H 0.076 0.924 18 H 0.072 0.928 19 H 0.071 0.929 20 H 0.153 0.847 21 H 0.170 0.830 22 H 0.324 0.676 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 -1.559 0.026 6.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.193 4.193 5 N 0.209 4.791 6 C -0.421 4.421 7 H 0.184 0.816 8 C -0.175 4.175 9 N -0.321 5.321 10 Si 0.722 3.278 11 H -0.169 1.169 12 H -0.163 1.163 13 H -0.175 1.175 14 C -0.108 4.108 15 C -0.164 4.164 16 C -0.093 4.093 17 H 0.094 0.906 18 H 0.091 0.909 19 H 0.090 0.910 20 H 0.170 0.830 21 H 0.187 0.813 22 H 0.138 0.862 23 H 0.105 0.895 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.886 -1.474 0.034 6.068 hybrid contribution 0.011 0.655 0.416 0.776 sum -5.875 -0.820 0.449 5.949 Atomic orbital electron populations 1.20723 0.89439 1.03514 1.02955 1.20319 0.97327 0.92253 1.02369 1.21290 0.91778 0.99757 0.96611 1.22208 0.94653 0.90540 1.11940 1.38197 1.08249 1.04729 1.27875 1.20886 0.78499 1.12955 1.29737 0.81641 1.26226 0.96430 0.97145 0.97723 1.69279 1.08083 1.25351 1.29359 0.86251 0.81147 0.80104 0.80318 1.16905 1.16313 1.17510 1.20886 0.93255 0.87984 1.08713 1.20890 1.00336 0.90910 1.04260 1.21219 0.91212 0.99615 0.97265 0.90557 0.90929 0.90993 0.82976 0.81318 0.86196 0.89516 0.89694 0.89763 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.40 10.06 36.00 0.36 0.77 15 2 C -0.12 0.20 5.94 -104.02 -0.62 -0.41 15 3 C -0.08 0.10 9.80 -39.50 -0.39 -0.29 15 4 C -0.06 -0.03 7.24 -17.05 -0.12 -0.16 15 5 N -0.14 -0.19 2.39 -58.45 -0.14 -0.33 15 6 C -0.28 -0.83 9.13 -15.71 -0.14 -0.97 15 7 H 0.17 0.48 6.26 -52.48 -0.33 0.16 15 8 C 0.06 0.22 5.36 -17.33 -0.09 0.12 15 9 N -0.70 -3.94 13.93 55.55 0.77 -3.17 15 10 Si 0.90 1.90 24.58 -169.99 -4.18 -2.28 15 11 H -0.24 -0.30 6.73 56.52 0.38 0.08 15 12 H -0.24 -0.51 6.79 56.52 0.38 -0.13 15 13 H -0.25 -0.79 7.11 56.52 0.40 -0.39 15 14 C 0.01 0.00 6.61 -82.09 -0.54 -0.55 15 15 C -0.11 0.25 9.37 36.00 0.34 0.58 15 16 C -0.07 0.14 9.40 -39.50 -0.37 -0.23 15 17 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 15 18 H 0.07 -0.31 8.10 -51.93 -0.42 -0.73 15 19 H 0.07 -0.30 8.10 -51.93 -0.42 -0.72 15 20 H 0.15 -0.58 8.06 -52.48 -0.42 -1.00 15 21 H 0.17 0.00 4.37 -52.48 -0.23 -0.23 15 22 H 0.32 1.32 8.30 -40.82 -0.34 0.98 15 23 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 15 24 H 0.08 -0.36 8.04 -51.93 -0.42 -0.77 15 25 H 0.08 -0.15 6.23 -51.93 -0.32 -0.47 15 26 H 0.15 -0.68 8.06 -52.48 -0.42 -1.11 15 LS Contribution 216.24 15.07 3.26 3.26 Total: 0.00 -4.48 216.24 -4.87 -9.34 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: -3.00 Total: -5.69 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.58 Total: -1.14 kcal Atomic # 7 Polarization: -4.13 SS G_CDS: 0.63 Total: -3.49 kcal Atomic # 14 Polarization: 1.90 SS G_CDS: -4.18 Total: -2.28 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -4.48 -4.87 -9.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196463880.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.440 kcal (2) G-P(sol) polarization free energy of solvation -4.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds