Wall clock time and date at job start Mon Mar 30 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39071 * 120.64946 * 2 1 4 4 C 1.37611 * 119.31395 * 179.97438 * 3 2 1 5 5 N 1.33510 * 120.64134 * 359.97438 * 4 3 2 6 6 C 1.34549 * 119.30451 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00405 * 212.22455 * 6 5 4 8 8 C 1.39989 * 120.00335 * 32.22519 * 6 5 4 9 9 N 1.30809 * 120.00277 * 194.08027 * 8 6 5 10 10 Si 1.86804 * 119.99520 * 14.07316 * 8 6 5 11 11 H 1.48495 * 109.47431 * 266.80751 * 10 8 6 12 12 H 1.48495 * 109.47050 * 26.81237 * 10 8 6 13 13 H 1.48504 * 109.46754 * 146.80778 * 10 8 6 14 14 C 1.33481 * 121.39276 * 0.25658 * 5 4 3 15 15 C 1.50698 * 119.68202 * 179.74639 * 14 5 4 16 16 C 1.37657 * 120.63820 * 359.48682 * 14 5 4 17 17 H 1.09005 * 109.46938 * 90.00042 * 1 2 3 18 18 H 1.09004 * 109.47600 * 209.99605 * 1 2 3 19 19 H 1.08997 * 109.47394 * 330.00639 * 1 2 3 20 20 H 1.08004 * 120.33908 * 0.02562 * 3 2 1 21 21 H 1.08004 * 119.67863 * 179.97438 * 4 3 2 22 22 H 0.96995 * 119.99998 * 179.97438 * 9 8 6 23 23 H 1.08998 * 109.47567 * 84.32214 * 15 14 5 24 24 H 1.09001 * 109.47210 * 204.32775 * 15 14 5 25 25 H 1.09003 * 109.47115 * 324.32095 * 15 14 5 26 26 H 1.08005 * 120.34619 * 180.23263 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2159 1.1964 0.0000 4 6 3.5916 1.1644 0.0005 5 7 4.2451 0.0001 0.0016 6 6 5.5906 0.0002 0.0015 7 1 6.1307 -0.7915 -0.4965 8 6 6.2906 1.0263 0.6471 9 7 7.5692 1.1875 0.4228 10 14 5.3986 2.1656 1.8286 11 1 4.9343 3.3719 1.0976 12 1 4.2294 1.4586 2.4101 13 1 6.3232 2.5718 2.9174 14 6 3.5919 -1.1639 -0.0030 15 6 4.3684 -2.4554 -0.0074 16 6 2.2157 -1.1961 0.0017 17 1 -0.3633 0.0000 -1.0277 18 1 -0.3634 -0.8900 0.5138 19 1 -0.3634 0.8900 0.5137 20 1 1.6921 2.1409 0.0004 21 1 4.1481 2.0900 0.0001 22 1 8.0541 1.8987 0.8698 23 1 4.6424 -2.7182 1.0143 24 1 3.7533 -3.2478 -0.4340 25 1 5.2713 -2.3344 -0.6060 26 1 1.6919 -2.1406 0.0017 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196463880.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:08 Heat of formation + Delta-G solvation = 98.890192 kcal Electronic energy + Delta-G solvation = -10488.133523 eV Core-core repulsion = 8648.888643 eV Total energy + Delta-G solvation = -1839.244880 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.15812 -37.37405 -35.36060 -34.26133 -30.77154 -28.78064 -27.19122 -25.27393 -22.57603 -20.93317 -18.79105 -18.32992 -16.97813 -16.86972 -16.19462 -15.27229 -15.01055 -14.67838 -14.22294 -13.82693 -13.77095 -13.44537 -13.31184 -12.97517 -12.58785 -12.33976 -12.21527 -11.65349 -10.96540 -10.28724 -9.52206 -7.44747 -0.51883 -0.19646 0.97146 1.07352 1.19633 1.61396 1.70524 1.90386 2.41818 3.46398 3.52116 3.64057 3.75375 4.02117 4.35044 4.51142 4.56110 4.65885 4.74191 4.84172 4.88047 4.96507 5.07197 5.24570 5.30058 5.41557 5.52509 5.99364 6.07340 7.49145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.088 4.088 4 C -0.054 4.054 5 N -0.152 5.152 6 C -0.335 4.335 7 H 0.151 0.849 8 C 0.047 3.953 9 N -0.769 5.769 10 Si 0.931 3.069 11 H -0.228 1.228 12 H -0.237 1.237 13 H -0.273 1.273 14 C 0.021 3.979 15 C -0.111 4.111 16 C -0.083 4.083 17 H 0.087 0.913 18 H 0.085 0.915 19 H 0.081 0.919 20 H 0.182 0.818 21 H 0.169 0.831 22 H 0.320 0.680 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.792 -2.080 -0.062 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.107 4.107 4 C -0.190 4.190 5 N 0.199 4.801 6 C -0.470 4.470 7 H 0.168 0.832 8 C -0.178 4.178 9 N -0.391 5.391 10 Si 0.751 3.249 11 H -0.152 1.152 12 H -0.160 1.160 13 H -0.199 1.199 14 C -0.097 4.097 15 C -0.168 4.168 16 C -0.101 4.101 17 H 0.105 0.895 18 H 0.104 0.896 19 H 0.100 0.900 20 H 0.199 0.801 21 H 0.186 0.814 22 H 0.133 0.867 23 H 0.108 0.892 24 H 0.130 0.870 25 H 0.092 0.908 26 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.357 -1.992 -0.062 9.567 hybrid contribution 0.616 0.685 0.404 1.006 sum -8.740 -1.307 0.341 8.844 Atomic orbital electron populations 1.20860 0.87394 1.04737 1.03957 1.20834 0.98778 0.91971 0.98083 1.21750 0.90914 1.01566 0.96427 1.22612 0.95715 0.90645 1.10009 1.38279 1.07877 1.05474 1.28425 1.20457 0.79190 1.13703 1.33692 0.83204 1.26584 0.96279 0.97408 0.97575 1.69342 1.09552 1.27606 1.32574 0.85876 0.80076 0.79998 0.78982 1.15216 1.15963 1.19903 1.21520 0.94297 0.88145 1.05746 1.21011 1.00370 0.90884 1.04504 1.21713 0.90421 1.01277 0.96685 0.89451 0.89645 0.89993 0.80097 0.81372 0.86680 0.89217 0.87010 0.90832 0.79646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.31 10.06 71.23 0.72 2.03 15 2 C -0.09 0.62 5.94 -19.48 -0.12 0.51 15 3 C -0.09 0.45 9.80 22.32 0.22 0.67 15 4 C -0.05 -0.03 7.24 84.29 0.61 0.58 15 5 N -0.15 -0.50 2.39 -338.85 -0.81 -1.31 15 6 C -0.34 -3.00 9.13 84.70 0.77 -2.23 15 7 H 0.15 1.57 6.26 -2.91 -0.02 1.55 15 8 C 0.05 0.53 5.36 85.27 0.46 0.99 15 9 N -0.77 -12.34 13.93 21.83 0.30 -12.04 15 10 Si 0.93 5.40 24.58 68.60 1.69 7.09 15 11 H -0.23 -0.60 6.73 99.48 0.67 0.07 15 12 H -0.24 -1.03 6.79 99.48 0.68 -0.36 15 13 H -0.27 -2.45 7.11 99.48 0.71 -1.75 15 14 C 0.02 -0.04 6.61 42.17 0.28 0.24 15 15 C -0.11 0.53 9.37 71.24 0.67 1.20 15 16 C -0.08 0.57 9.40 22.32 0.21 0.78 15 17 H 0.09 -1.08 8.14 -2.38 -0.02 -1.10 15 18 H 0.08 -1.12 8.10 -2.39 -0.02 -1.14 15 19 H 0.08 -1.02 8.10 -2.39 -0.02 -1.04 15 20 H 0.18 -2.01 8.06 -2.91 -0.02 -2.03 15 21 H 0.17 0.05 4.37 -2.91 -0.01 0.04 15 22 H 0.32 4.24 8.30 -92.71 -0.77 3.47 15 23 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 15 24 H 0.11 -1.16 8.04 -2.39 -0.02 -1.17 15 25 H 0.07 -0.13 6.23 -2.39 -0.01 -0.15 15 26 H 0.19 -2.48 8.06 -2.91 -0.02 -2.50 15 Total: 0.00 -14.15 216.24 6.09 -8.06 By element: Atomic # 1 Polarization: -7.66 SS G_CDS: 1.09 Total: -6.56 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 3.82 Total: 4.76 kcal Atomic # 7 Polarization: -12.84 SS G_CDS: -0.51 Total: -13.35 kcal Atomic # 14 Polarization: 5.40 SS G_CDS: 1.69 Total: 7.09 kcal Total: -14.15 6.09 -8.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196463880.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.951 kcal (2) G-P(sol) polarization free energy of solvation -14.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds